Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48937g00001 ATGCCAATTCTTCGTTCGTACATAGATCAACGCGTTGATCAAATGTTTAACACTGGAATGGTTAATGAGTTACGACCGTTTTATAATCCGAACGGAGATTACTCAAAAGGGATACGAAAAGCCATTGGTGTTCCCGAATTCGATGAGTATTTTCGAAAGGAAAGTTTTGTGGACGACGAAACAAAGAAAATGTTGCTTGAAAAAGCTTTGAGTGAAATGAAGATGAATACATGGAAATTAGCTAGGAAACAACTTGGAAAGATTCATTGGCTTAAGAATGTTAAGAGATGGAATATTCATAGGTTAGATGCTACACCTGTTTTTAAGAAGCATGGAAAAGAAACTGATGAAACATGGAAGAAGATTGTGGCAGANNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNCTTAGAGTGCCAATTTCTCAGAGTGATCTTATGGCTGCTGCAACATGTTAG 501 0.3154 MPILRSYIDQRVDQMFNTGMVNELRPFYNPNGDYSKGIRKAIGVPEFDEYFRKESFVDDETKKMLLEKALSEMKMNTWKLARKQLGKIHWLKNVKRWNIHRLDATPVFKKHGKETDETWKKIVAXXXXXXXXXXXXXXXXXXXXXXXXXXLRVPISQSDLMAAATC 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48937g00001 166 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 3 125 IPR039657 -
Trme48937g00001 166 Pfam IPP transferase 3 85 - -
Trme48937g00001 166 Gene3D - 100 124 IPR027417 -
Trme48937g00001 166 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 1 99 - -
Trme48937g00001 166 FunFam Adenylate isopentenyltransferase 5, chloroplastic 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48937g00001 Trme-Chr48937 114 614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48937g00001 3 124 C2H2 Transcription Factor Family AT2G27760 30.201 1.23e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48937g00001 K10760 - lja:Lj0g3v0314129.1 192.586