Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48893g00001 GTTAGAGAGAATTCGCATAAAAATGGCTTATTAAATCTCCAAGAGATAGTACTTACTGAGATACTTGGAGACAAGGAGATCAGGTTGAGAAATGTGAAGAATGGAATGTCAATAATAGAACAAAGGCTCTCTAGTAAAAAAGTTCTTTTGGTTCTTGATGATGTTGACAAAATAGAGCAGTTACAAGCTATTGCTGGAGCACCTAATTGGTTTGGTTCTGGTAGCATAGTAATCATAACAACTCGGGAAAAAAATTTACTATTACAGCATTGGGTTGAAAGTAAATTATATGAGGTGGAGGAGTTGAATGACAAAGAAGCTTGTGAATTACTTAGTTGGAATGCTTTCAAAACTGACAAAGTTGATCCAAAGTACACCAAGATTTTAAACCGTGCATTGCGTTATGCTTCTCGGCTCCCGCTGGCCTTGGAAGTAGTGGGTTCCAACTTGTTTGGAAAAGGAAAAGAAGAATGCAAACTTATATTAGATCGGTATGACAGAATCCCAGATAAAAAGATCCAAGACATACTNAGAGTAAGCTTTGATTCCTTGGATGAAGAAGACAAGGATGTTTTTCTTGACATTGCTTGTTGCTTCGGAGGATATAAATTGTCAGATGTTGAAAATATACTACATGCTCACCATGGTTCATCAATGAAACTTGGTATTGAGCTGCTGATTGAAAGATCTCTCATAAAGATTGATGATGGTCTTGTGACATTACATGAATTGATACAAGACATGGGTAAAGAAATTGTGCGACAAGAATCAAAAGAGCCCAATGAACGTAGTAGGTTATGGAACATTGAACATGTGGTCCAAGTTTTAGAAGAAAACAAGGTGAGACCAATTTTGTTAGTCTGA 864 0.3657 VRENSHKNGLLNLQEIVLTEILGDKEIRLRNVKNGMSIIEQRLSSKKVLLVLDDVDKIEQLQAIAGAPNWFGSGSIVIITTREKNLLLQHWVESKLYEVEELNDKEACELLSWNAFKTDKVDPKYTKILNRALRYASRLPLALEVVGSNLFGKGKEECKLILDRYDRIPDKKIQDILRVSFDSLDEEDKDVFLDIACCFGGYKLSDVENILHAHHGSSMKLGIELLIERSLIKIDDGLVTLHELIQDMGKEIVRQESKEPNERSRLWNIEHVVQVLEENKVRPILLV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48893g00001 287 Gene3D - 1 95 IPR027417 -
Trme48893g00001 287 PRINTS Disease resistance protein signature 136 150 - -
Trme48893g00001 287 PRINTS Disease resistance protein signature 42 56 - -
Trme48893g00001 287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 195 IPR027417 -
Trme48893g00001 287 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 275 IPR044974 GO:0006952
Trme48893g00001 287 SUPERFAMILY "Winged helix" DNA-binding domain 171 277 IPR036390 -
Trme48893g00001 287 Gene3D - 101 185 IPR042197 -
Trme48893g00001 287 Pfam NB-ARC domain 35 153 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48893g00001 Trme-Chr48893 62 925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48893g00001 36 278 WRKY Transcription Factor Family AT5G45050 34.426 4.34e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48893g00001 - - cam:101495757 381.333