Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48887g00001 ATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTATGAATACCTGGAAAACGGAAGCCTAGAAGACTATCTTCTCAACAGAAGTGGAAAACCACCACTTCCTTGGTTTTTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGTCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTTCATCGAGATATAAAACCCGGCAACATCTTGTTAGACAGAAATTATGTTAGCAAAATTTCAGATGTTGGATTAGCTAAACTCATTTCCGACGCTGTACCTGACAATATCACAGAGTACAGAGAATCAGTGCTTGCTGGTACACTTCATTACATGGACCCAGAGTATCAAAGAACTGGCACTGTTCGACCAAAATCAGATATATATGCTTTTGGAGTAATAATTCTTCAGTTGATAACTGCTCGCCATGCACGCGGACTTATTATGACTATTGAAGATGCAATTACAAATGGATCCTTTCGCGATATTTTAGATAAATCAGCTGGAGATTGGCCACTGAATGAGACAATTGAATTGGCTGAAATTGGTCTTAAATGCACTGCCCTTAGATGCAGAGATAGACCAGAACTTGATACTGAAATTCTTCCACTGCTCAAAAGACTTTCTGATGTGGCAAATGCTAGCGTCAAGAAAGGAAGAAATAGTATATCCACCCCAAGCCAATATTATTGTCCAATCCTTCAGGAAATCATGGATGAGCCATATATCGCCGCTGATGGTTTCA 757 0.3963 MVLLLGACPENGCLVYEYLENGSLEDYLLNRSGKPPLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLISDAVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDIYAFGVIILQLITARHARGLIMTIEDAITNGSFRDILDKSAGDWPLNETIELAEIGLKCTALRCRDRPELDTEILPLLKRLSDVANASVKKGRNSISTPSQYYCPILQEIMDEPYIAADGF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48887g00001 252 ProSitePatterns Serine/Threonine protein kinases active-site signature. 64 76 IPR008271 GO:0004672|GO:0006468
Trme48887g00001 252 SUPERFAMILY Protein kinase-like (PK-like) 2 201 IPR011009 -
Trme48887g00001 252 Pfam Protein tyrosine and serine/threonine kinase 2 202 IPR001245 GO:0004672|GO:0006468
Trme48887g00001 252 ProSiteProfiles U-box domain profile. 228 252 IPR003613 GO:0004842|GO:0016567
Trme48887g00001 252 SMART serkin_6 1 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48887g00001 252 ProSiteProfiles Protein kinase domain profile. 1 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48887g00001 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 252 IPR013083 -
Trme48887g00001 252 Gene3D Transferase(Phosphotransferase) domain 1 1 215 - -
Trme48887g00001 252 PANTHER OS02G0152300 PROTEIN 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48887g00001 Trme-Chr48887 1 877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48887g00001 1 252 U-box Gene Family AT2G19410 69.444 1.19e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme48887g00001 PK_Tyr_Ser-Thr 2.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48887g00001 - - lja:Lj4g3v2172820.1 468.388