Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48878g00001 GTAAAACCATCACCTCTTCCAGATAGCTGGAAGCTATCAGAGATATTTACTACCGGCGTTGTGCTTGGTAGTTACTTGGCAATGATGACGGTTATATTCTTTTGGGTGGCATACAAAACAGATTTCTTCCCGAAAGTGTTTGGAGTCGAGACTCTTGAAAAAACTGCTCATGATGATTTCCGAAAACTTGCCTCCGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCTCTTATATTTGTAACTCGATCTCGAGGTTGGTCGTATGTTGAGCGTCCTGGTTTATTGCTGGTTGCTGCCTTTATCATTGCTCAACTCATTGCAACTTTGATTGCCGTTTATGCTAGCTGGAGCTTTGCTGCAATTGAAGGGATAGGTTGGGGTTGGGCAGGTGTTATATGGTTATACAACTTAATATTCTACATTCCGCTCGATTTCATTAAATTTTTCATTCGCTATGCTTTGAGTGGGAGAGCTTGGGATCTTGTTATTGAACAAAGGGTGAGTTGA 510 0.4157 VKPSPLPDSWKLSEIFTTGVVLGSYLAMMTVIFFWVAYKTDFFPKVFGVETLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFIIAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNLIFYIPLDFIKFFIRYALSGRAWDLVIEQRVS 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48878g00001 169 Gene3D - 1 154 - -
Trme48878g00001 169 PANTHER CALCIUM-TRANSPORTING ATPASE 1 168 - -
Trme48878g00001 169 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 155 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48878g00001 Trme-Chr48878 1 832 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48878g00001 1 169 Primary Pumps ATPases AT5G62670 88.757 1.84e-104 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48878g00001 K01535 - egr:104426330 322.398