Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48862g00001 ATGATTGGTCCTTATTGGTCTTATGGAGTTTTTGGAACCTTAGCTGCTTTTACTACTGGTGCTCTTATGCCACTTTTTGCTCTTGGAATCTCTCATGCTCTTGTATCATATTATATGGATTGGCATAGCACACAACATGAAGTGAAAAAAATTGCTTTCCTCTTCTGTGGAGCAGCAATTGTAGCTATCACTGCCTATACCATTGAACATCTTTCTTTTGGAATCATGGGTGAACGACTTACACTTCGTGTCAGGGAAATTATGATTTCTGCTATTTTGAAGAATGAAATCGGTTGGTTTGATGATACGAGAAACACAAGTACTATGCTTTCATCACGTTTAGAGACTGATGCAACTTTGTTAAAAACTATAGTGGTGGACCGTTCTACAATTCTCTTGCAGAATGTTGGCCTAGTTGTTACTTCATTTATTATTGCATTCATTTTGAACTGGAGGATAACACTTGTTGTCTTGGCAACATATCCTTTGATAATTAGTGGTCACATTGGTGAG 513 0.3743 MIGPYWSYGVFGTLAAFTTGALMPLFALGISHALVSYYMDWHSTQHEVKKIAFLFCGAAIVAITAYTIEHLSFGIMGERLTLRVREIMISAILKNEIGWFDDTRNTSTMLSSRLETDATLLKTIVVDRSTILLQNVGLVVTSFIIAFILNWRITLVVLATYPLIISGHIGE 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48862g00001 171 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 10 165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme48862g00001 171 Gene3D ABC transporter type 1, transmembrane domain 1 169 IPR036640 GO:0005524|GO:0016020
Trme48862g00001 171 Pfam ABC transporter transmembrane region 11 165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme48862g00001 171 PANTHER ABC TRANSPORTER B FAMILY 9 167 IPR039421 -
Trme48862g00001 171 SUPERFAMILY ABC transporter transmembrane region 2 165 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48862g00001 Trme-Chr48862 57 662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48862g00001 12 164 Calmodulin-binding Proteins AT2G36910 29.747 6.73e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48862g00001 K05658 - gmx:100819045 290.812