Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48851g00001 ATGGCTGTTCATACAAAATATCGTCTCATTACTTACTCACCAGAGATTGTAGATGGGAAGCCTATTTTTGTTTCGTCCAACTGTCTTCCGACCAAGGCGTTGAAATATGAGCCGGCAGGTCACTCTTTTCACTCTGCTGCACTTAAACTTATTGGTGTTAAGGAAGAAAAAGAAAACAAAGAGGCTGATAATAAGAAAGTGGTTGGTGACAAGGAACAAGCTTATTTGCCATCTGATTCTTACAGCAGCAAGAGCAAAAAGAAATCTGGCGACGGAGACAAGCAACAACAGGATCACTATGCATTGTTGGGTTTGAGTCATCTTAGGTATCTTGCTACAGAGGATCAAATTCGTAAAAGTTATCGTGAAGCTGCACTGAGGTTTCATCCAGATAAACAAGCTGCCCTTCTTCTTGCTGAGAAAACTGAAGTTGCGAAGGAGGCAAAGAAGGATGAAATAGAAACTCATTTCAAGGCAATTCAAGAGGCATATGAAGTGTTGGTTGATCCCACGAAAAGAAGAATTTACGATTCTACCGACGAGTTTGATGACGAGATTCCCACCGACTGTGCTCCACAAGACTTCTTCAAG 591 0.4162 MAVHTKYRLITYSPEIVDGKPIFVSSNCLPTKALKYEPAGHSFHSAALKLIGVKEEKENKEADNKKVVGDKEQAYLPSDSYSSKSKKKSGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYREAALRFHPDKQAALLLAEKTEVAKEAKKDEIETHFKAIQEAYEVLVDPTKRRIYDSTDEFDDEIPTDCAPQDFFK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48851g00001 197 SUPERFAMILY Chaperone J-domain 92 176 IPR036869 -
Trme48851g00001 197 Pfam DnaJ domain 98 177 IPR001623 -
Trme48851g00001 197 CDD DnaJ 98 169 IPR001623 -
Trme48851g00001 197 ProSitePatterns Nt-dnaJ domain signature. 157 176 IPR018253 -
Trme48851g00001 197 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 197 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Trme48851g00001 197 SMART dnaj_3 97 172 IPR001623 -
Trme48851g00001 197 MobiDBLite consensus disorder prediction 77 96 - -
Trme48851g00001 197 ProSiteProfiles dnaJ domain profile. 98 180 IPR001623 -
Trme48851g00001 197 Gene3D DnaJ domain 81 189 IPR036869 -
Trme48851g00001 197 PRINTS DnaJ domain signature 103 121 IPR001623 -
Trme48851g00001 197 PRINTS DnaJ domain signature 152 172 IPR001623 -
Trme48851g00001 197 PRINTS DnaJ domain signature 121 136 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48851g00001 Trme-Chr48851 25 615 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48851g00001 99 178 C2H2 Transcription Factor Family AT1G74250 40.964 2.82e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48851g00001 K09522 - gmx:100814414 307.375