Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48797g00001 ATGGTGGGAAGCCAGACAACTGAACAGGGCGATTGCTCGAAATTCAAAGGAGCACGTCCTCATTGTTGTAAGAAAGATCCAACAGTAGTTGATCTTTTGCCAGGAGCACCTTACAACCAGCAGATCGCAAATTGTTGCAAAGGTGGAGTCTTGAGTTCATGGGCTCAAGATCCAAGCAATGCAGTAAGTTCGTTCCAGCTTATTGTTGGTTCTGCTGGAACCACTAATAAGACAGTTAAACTTCCAAAAAACTTCACACTCAAATCACCTGGTCCTGGTTATACTTGTGGTCCTGCAAAGATTGTTAGACCAACTCAATTTCTTACCAGTGATAAGAGAAGAGTCACACAAGCTTTGATGACTTGGAACATTACATGTACTTACTCTCAGCTCCTAGCTCAAAGGACACCAACTTGTTGTGTTTCACTATCATCCTTCTACAATGATACAATAGTAAAATGCCCAACCTGCACATGTGGCTGCCAAAATAAAACACAACCTGACAGTTGTGTAAA 515 0.4194 MVGSQTTEQGDCSKFKGARPHCCKKDPTVVDLLPGAPYNQQIANCCKGGVLSSWAQDPSNAVSSFQLIVGSAGTTNKTVKLPKNFTLKSPGPGYTCGPAKIVRPTQFLTSDKRRVTQALMTWNITCTYSQLLAQRTPTCCVSLSSFYNDTIVKCPTCTCGCQNKTQPDSCV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48797g00001 171 PANTHER PROTEIN COBRA 1 171 IPR006918 GO:0010215|GO:0016020
Trme48797g00001 171 Pfam COBRA-like protein 1 129 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48797g00001 Trme-Chr48797 38 886 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48797g00001 1 171 COBRA Gene Family AT3G02210 80.117 3.43e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48797g00001 - - gmx:100811581 328.176