Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme48757g00001 | ATTACAACTGAGGGTGAAGATGCTTCGGATGTGAAGGTGGATGCCGAGAAAATTCTTCAGAGTAATAACGGCGTTGAGAATGATGATACTGCATGTCAAAATGGTGATGCTGATGCTGAAACGACGGCGGTGGAGGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGACAGTAAAACTTGTGATAATGAACCTATATCGTCAAGTCATAACAATCCTACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGATCCTATTGCACCACAACCTCCCCCTGCTGATACAATGCCAGAAAGCAAGAATGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCAAGCTGCTGAGCCTGCAGATAACGGGGTCCCGGATTCGCCGCAGAACATGTATTTCTTGGATCCTGATCATTATTATGATGGTAATGAGCCGGGAACGGAAGTGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGGGCATGGAATTCAAACCTCCCAAATTTTACGGAGAAACACTTAATTGTCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAG | 609 | 0.4417 | ITTEGEDASDVKVDAEKILQSNNGVENDDTACQNGDADAETTAVEVEVKPEVCEAADSKTCDNEPISSSHNNPTTPQPDPSDTNEPIPSSHNDPIAPQPPPADTMPESKNVLEDESKAGEEQAAEPADNGVPDSPQNMYFLDPDHYYDGNEPGTEVDQAAFMKELENFFRERGMEFKPPKFYGETLNCLKLWRSVMRLGGYEK | 203 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme48757g00001 | 203 | MobiDBLite | consensus disorder prediction | 20 | 37 | - | - | |
Trme48757g00001 | 203 | Gene3D | - | 143 | 203 | IPR036431 | GO:0003677 | |
Trme48757g00001 | 203 | Pfam | ARID/BRIGHT DNA binding domain | 158 | 203 | IPR001606 | GO:0003677 | |
Trme48757g00001 | 203 | ProSiteProfiles | ARID domain profile. | 155 | 203 | IPR001606 | GO:0003677 | |
Trme48757g00001 | 203 | MobiDBLite | consensus disorder prediction | 61 | 91 | - | - | |
Trme48757g00001 | 203 | SUPERFAMILY | ARID-like | 146 | 203 | IPR036431 | GO:0003677 | |
Trme48757g00001 | 203 | CDD | ARID | 157 | 203 | - | - | |
Trme48757g00001 | 203 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 21 | 203 | IPR045147 | GO:0006357 | |
Trme48757g00001 | 203 | MobiDBLite | consensus disorder prediction | 20 | 153 | - | - | |
Trme48757g00001 | 203 | MobiDBLite | consensus disorder prediction | 42 | 58 | - | - | |
Trme48757g00001 | 203 | MobiDBLite | consensus disorder prediction | 108 | 122 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme48757g00001 | Trme-Chr48757 | 249 | 968 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme48757g00001 | 113 | 202 | ARID Transcription Factor Family | AT1G20910 | 44.444 | 2.51e-19 | 83.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Trme48757g00001 | ARID | 1.8e-07 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme48757g00001 | - | - | psat:127119953 | 313.538 |