Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48757g00001 ATTACAACTGAGGGTGAAGATGCTTCGGATGTGAAGGTGGATGCCGAGAAAATTCTTCAGAGTAATAACGGCGTTGAGAATGATGATACTGCATGTCAAAATGGTGATGCTGATGCTGAAACGACGGCGGTGGAGGTTGAGGTGAAGCCTGAAGTTTGTGAAGCGGCTGACAGTAAAACTTGTGATAATGAACCTATATCGTCAAGTCATAACAATCCTACTACACCACAACCTGACCCTTCTGATACAAATGAACCTATACCGTCAAGTCATAACGATCCTATTGCACCACAACCTCCCCCTGCTGATACAATGCCAGAAAGCAAGAATGTTTTAGAAGATGAAAGTAAGGCTGGTGAAGAGCAAGCTGCTGAGCCTGCAGATAACGGGGTCCCGGATTCGCCGCAGAACATGTATTTCTTGGATCCTGATCATTATTATGATGGTAATGAGCCGGGAACGGAAGTGGACCAAGCCGCTTTTATGAAGGAGCTTGAAAACTTCTTTAGAGAGAGGGGCATGGAATTCAAACCTCCCAAATTTTACGGAGAAACACTTAATTGTCTTAAGTTATGGAGATCAGTGATGAGATTGGGAGGCTATGAAAAG 609 0.4417 ITTEGEDASDVKVDAEKILQSNNGVENDDTACQNGDADAETTAVEVEVKPEVCEAADSKTCDNEPISSSHNNPTTPQPDPSDTNEPIPSSHNDPIAPQPPPADTMPESKNVLEDESKAGEEQAAEPADNGVPDSPQNMYFLDPDHYYDGNEPGTEVDQAAFMKELENFFRERGMEFKPPKFYGETLNCLKLWRSVMRLGGYEK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48757g00001 203 MobiDBLite consensus disorder prediction 20 37 - -
Trme48757g00001 203 Gene3D - 143 203 IPR036431 GO:0003677
Trme48757g00001 203 Pfam ARID/BRIGHT DNA binding domain 158 203 IPR001606 GO:0003677
Trme48757g00001 203 ProSiteProfiles ARID domain profile. 155 203 IPR001606 GO:0003677
Trme48757g00001 203 MobiDBLite consensus disorder prediction 61 91 - -
Trme48757g00001 203 SUPERFAMILY ARID-like 146 203 IPR036431 GO:0003677
Trme48757g00001 203 CDD ARID 157 203 - -
Trme48757g00001 203 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 21 203 IPR045147 GO:0006357
Trme48757g00001 203 MobiDBLite consensus disorder prediction 20 153 - -
Trme48757g00001 203 MobiDBLite consensus disorder prediction 42 58 - -
Trme48757g00001 203 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48757g00001 Trme-Chr48757 249 968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48757g00001 113 202 ARID Transcription Factor Family AT1G20910 44.444 2.51e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trme48757g00001 ARID 1.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48757g00001 - - psat:127119953 313.538