Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48747g00001 GGTGCAGGGGAGGTAGAATTTTTTACCGAGTATGGAGAGGCAAATCGGTACCAAGTCCAAGAAGTTGTTGGGAAAGGAAGTTACGGTGTTGTGGTTTCTGCCGTGGATACTATTACTGGGGAAAAAGTTGCAATTAAGAAAATCAATGATGTTTTTGAGCATGTATCGGATGCCACACGGATACTAAGAGAAATTAAACTTCTTCGTTTGCTACGACATCCTGATATAGTAGAAATTAAACATATAATGCTTCCACCTTCACGAAGAGAGTTCAAGGATGTCTATGTTGTGTTTGAGTTAATGGAATCTGACCTTCATCAAGTAATTAAAGCAAACGATGATCTTACTCCCGAGCACTATCAATTTTTCTTGTACCAGCTTCTTCGGGGCCTGAAATATACACATACAGCCAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTAGCTAATGCTGATTGCAAATTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCGTCAGCTATATTCTGGACTGTAAGCATTCTATTGTACATATAA 561 0.3797 GAGEVEFFTEYGEANRYQVQEVVGKGSYGVVVSAVDTITGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYTHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTVSILLYI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48747g00001 186 SMART serkin_6 17 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48747g00001 186 ProSitePatterns Protein kinases ATP-binding region signature. 23 47 IPR017441 GO:0005524
Trme48747g00001 186 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 16 170 - -
Trme48747g00001 186 ProSitePatterns MAP kinase signature. 52 155 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trme48747g00001 186 FunFam Mitogen-activated protein kinase 101 184 - -
Trme48747g00001 186 FunFam Mitogen-activated protein kinase 6 112 - -
Trme48747g00001 186 Pfam Protein kinase domain 17 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48747g00001 186 ProSiteProfiles Protein kinase domain profile. 17 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48747g00001 186 SUPERFAMILY Protein kinase-like (PK-like) 11 171 IPR011009 -
Trme48747g00001 186 Gene3D Transferase(Phosphotransferase) domain 1 112 179 - -
Trme48747g00001 186 Gene3D Phosphorylase Kinase; domain 1 3 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48747g00001 Trme-Chr48747 261 896 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48747g00001 3 179 MAP Kinase Gene Family AT1G18150 93.220 2.99e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme48747g00001 Pkinase 8.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48747g00001 - - pvy:116117466 334.724