Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48732g00001 ATGGGTCTGTTTGGATCGAGTTATTTGAACTTATCTACTTGCATAAGCACTTGGAAAGATCTTGATGCTGTTCTTAAAGCAACGCCTACATTGCCGGAGAGGGAGGCTAGGGTCATTTTAAGTCAGATTTTCCATGGCCTTATTTACATGAATAAAAGAACACTGAAGATTATTCATTATGATTTAAAGCCTGGAAATGTTTTGTTTGATGAANNNNNNNNNNTNNNNNNNNNNGATTTTGGTCTTAGCAAGATAGTGGAGAATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGTGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGAGCTCAGCAAGACACCACTTATATCATCCAAG 372 0.3763 MGLFGSSYLNLSTCISTWKDLDAVLKATPTLPEREARVILSQIFHGLIYMNKRTLKIIHYDLKPGNVLFDEXXXXXXXDFGLSKIVENDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48732g00001 124 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48732g00001 124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Trme48732g00001 124 Pfam Protein kinase domain 18 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48732g00001 124 PANTHER MIXED LINEAGE PROTEIN KINASE 19 124 - -
Trme48732g00001 124 SUPERFAMILY Protein kinase-like (PK-like) 19 113 IPR011009 -
Trme48732g00001 124 Gene3D Transferase(Phosphotransferase) domain 1 12 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48732g00001 Trme-Chr48732 30 863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48732g00001 39 118 Receptor kinase-like Gene Family AT1G70130 37.037 3.13e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Trme48732g00001 Pkinase 9.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48732g00001 K08864 - gmx:100789927 185.267