Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48719g00001 AAAGGACTAGCATATCTTCACCACGATTGTAGATCAAGGATCTTACACCTTGATATAAAGCCAGAAAATATACTCTTGGACGAGTGCTTTAGAGCACTTGTTTCCGATTTCGGTCTCTCAAAACTTACCGGTAAAGGCGAAAGCCACTCGGTGTCTGCAATAAGAGGAACAAGAGGGTTAATGGAATGTGGGGGTGTTGATGAGATGGAGGTGTATAAATTGGTTTATACTGCTTTATGGTGTGTCCAAGAGAAGCCAAGGTTAAGGCCTAGTATGGCTAGGGTGGTTGATATGCTTGAAGGGCGTGTGAGAGTGGAGGAGCCACCTAGTAGTAAAATGATTCTTGTTGATTTTCTTTGTGTTGATGATGATAATGTTGTTGCAGATAGTAATAACATTAACATGCCAAGGTTGGACACTATGTCTAGTCAAGGAACACAAAGCAATGTGGAATGTAATTCTACCTACTCTTTTGCTACTACTGTTTTTTCTGGAAGATAG 501 0.4072 KGLAYLHHDCRSRILHLDIKPENILLDECFRALVSDFGLSKLTGKGESHSVSAIRGTRGLMECGGVDEMEVYKLVYTALWCVQEKPRLRPSMARVVDMLEGRVRVEEPPSSKMILVDFLCVDDDNVVADSNNINMPRLDTMSSQGTQSNVECNSTYSFATTVFSGR 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48719g00001 166 Gene3D Transferase(Phosphotransferase) domain 1 1 63 - -
Trme48719g00001 166 SUPERFAMILY Protein kinase-like (PK-like) 1 122 IPR011009 -
Trme48719g00001 166 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48719g00001 166 Pfam Protein kinase domain 1 58 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48719g00001 166 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 60 - -
Trme48719g00001 166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 14 26 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48719g00001 Trme-Chr48719 2 718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48719g00001 1 72 Receptor kinase-like Gene Family AT5G20050 62.821 5.66e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme48719g00001 Pkinase 4.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48719g00001 - - gmx:100791152 144.821