Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48697g00001 ATGGGACGTGTGATTCGTGCCCAGCGTAAGGGTGCTGGTTCTGTATTCAAGTCTCACACCCACCACCGCAAAGGTCCCGCTCGTTTCCGTAGTCTCGACTTCGGTGAGCGTAATGGTTACCTTAAAGGAGTTGTAACCGACGTCATCCACGATCCAGGTCGTGGTGCTCCTCTTGCCAAAGTTACTTTCCGTCATCCATTTCGTTACAAGAAACAGAACGAACTTTTTGTTGCTGCTGAAGGTTTATACACCGGTCAATTCATTTACTGCGGTAAGAAAGCTACCCTTGTCGTCGGTAATGTTCTTCCTTTGAGATCTATTCCCGAAGGAGCTGTCATTTGTAACGTTGAAGGTCATGTTGGTGACCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCTATTGTTATCAGTCATAACCCTGATAACGATACCTCTAG 440 0.4705 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48697g00001 146 Pfam Ribosomal Proteins L2, C-terminal domain 98 140 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme48697g00001 146 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme48697g00001 146 Gene3D - 90 146 IPR014722 -
Trme48697g00001 146 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Trme48697g00001 146 SMART Ribosomal_L2_C_2 96 146 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme48697g00001 146 Gene3D - 1 86 IPR012340 -
Trme48697g00001 146 PANTHER RIBOSOMAL PROTEIN L2 2 143 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme48697g00001 146 SUPERFAMILY Translation proteins SH3-like domain 99 142 IPR008991 -
Trme48697g00001 146 FunFam 60S ribosomal protein L2 1 86 - -
Trme48697g00001 146 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48697g00001 Trme-Chr48697 510 949 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48697g00001 1 146 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.466 1.12e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48697g00001 K02938 - gmx:547677 296.975