Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4867g00001 ATGAAAGAGCTTACGCAGAACAACTCTATTATTGCCAAGATGCTTTTGGAGAAGGTGAAAGGTAACTATAAGTTGGTGGTGACTGATCATAACTTCATAATTGATGCCATTGCTGCTGAAACAATCAATAATCTTTGTGAAACGGTTAAACTGATGGTGGATGCTGGGTTTAAGAAAGAGTGTTCCGACTTGTACATTAGTTTGCGTAAAGAATGGTTGAAAGATTTAATAATAAATAAATCATTAGGATTGAGAAAGATGGGATTTCAGGATTACATGATTGGAAGATGGATTAAAGCTTCCAAGGTTGCTCTTAGAATATTATTTCCCAGTGAGCGTCGCCTCTATGATAGTGTCTTCTCGGAATCCTTTATGTCATCTGATCTTTGTTTTTCTGAGGTTTGTCGTGGAGCAACGATACAACTGTTGGACTGTGCTGATTCATTTATGAATCAAAGTCCTTCAGCATGGCGTTTGTTTAAAATCGTTGACTTGTTTGAGACACTCTGTGATCTCATTCCTGAATTTGTAGCATTGTTTACTGATTCCTTGGTGAATGAAGCAATAAAAACTAAGAATAGATTGGGTGAAGTAAGTAGAGATATTTTCATGGAATTTGGCAATCTGATCTTTCTTACGCCGGATGCAGAGTTAGATTGTTGGGTTGACGGCGGGGTTCATCCAATGACCTGCGAGGCTACAGGCTACATCGTGTTGGCTTTCTGGTCAAGACAGAAACTGGAGCAAGTTTTACGAGAATACTCCTTGGTTGTAGCTGATGGAGCGGGAACATCTTTATTCGATTCACAGATGGAGCTGATAATGGAAAAGTTTGAGAGAAATTTGGAAGCTAAGTCACAAACTTATGAGGACCCCGCTTTGCGGTATTTTTTCATGCTGAATAATATAAGCCTGATTAAGTACAAATTGGAAACCTTTTGGGATGATAGGTTCTGTAAAAACACAAGGCARTACTTGGAACTCTATTGTAAAAGCTCATGGAGTAAGGTTATAGATGTTTTGAAAATGGATATAAATGAGTCTGCGGCGTCTAATTCTGAAGCAGATTCAATGAAAAGCAAACTCAATCTGTTCATTCAAAAGTTTAGGGAGATGTGTGGAATTCAGTCTACATGGCGTGTTTTTGATGAACAGCTTAGGAAACAAATAATAATTTATGTGGAAAACATGTTGTTTCCKGAGTATGAAAACTTCAYTGCGAGGTTTGAGAATGTTCTTGGTATAAATGCCGATGAGTATAGAATGTCTGACATTCAAACTCAACTCAATCATTTGTTTCTTTTACAGGATATTGATGTTGATTCTGTTAGAGGATCTGTTAGGAATCAATTAGTTAGTTAG 1362 0.373 MKELTQNNSIIAKMLLEKVKGNYKLVVTDHNFIIDAIAAETINNLCETVKLMVDAGFKKECSDLYISLRKEWLKDLIINKSLGLRKMGFQDYMIGRWIKASKVALRILFPSERRLYDSVFSESFMSSDLCFSEVCRGATIQLLDCADSFMNQSPSAWRLFKIVDLFETLCDLIPEFVALFTDSLVNEAIKTKNRLGEVSRDIFMEFGNLIFLTPDAELDCWVDGGVHPMTCEATGYIVLAFWSRQKLEQVLREYSLVVADGAGTSLFDSQMELIMEKFERNLEAKSQTYEDPALRYFFMLNNISLIKYKLETFWDDRFCKNTRQYLELYCKSSWSKVIDVLKMDINESAASNSEADSMKSKLNLFIQKFREMCGIQSTWRVFDEQLRKQIIIYVENMLFPEYENFXARFENVLGINADEYRMSDIQTQLNHLFLLQDIDVDSVRGSVRNQLVS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4867g00001 453 PANTHER EXOCYST COMPLEX PROTEIN EXO70 32 433 IPR004140 GO:0000145|GO:0006887
Trme4867g00001 453 Gene3D Exocyst complex component Exo70 2 437 - -
Trme4867g00001 453 Pfam Exo70 exocyst complex subunit 96 430 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme4867g00001 453 SUPERFAMILY Cullin repeat-like 17 433 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4867g00001 Trme-Chr4867 522 1883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4867g00001 27 433 EXO70 exocyst subunit family AT5G58430 42.989 1.47e-99 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4867g00001 K07195 - psat:127118474 600.127