Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48678g00001 ACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGGAACAAATGGGCGGAATTAACGAAATTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCGGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCCTGCTTACTCAGTTGCAGTCTGTACCTCATGTTGGAAATCCTAGTCAACCAATGGTTGCAACATCTTCAAGGTTGCAATGTAAGGAAGAAGATAATGTTCTTCAGGGGACTGAAGGAGATGAATTTTTAGAGTGTAGCCACGAGTCAGCTAATGCTCTCCAATTTCCATCCACTAGAGAGATGACCAGTGTTGACTCACAAACTGTAGGGGGATATAGGCCAAATGAAGAATGTAGTCTTGCGACGGATCATAGTCCAAGTCAAGCATCCTGTTCAGAGCCATATTATCTAGCAATTGACGCTGTTAC 467 0.4261 TQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSVPHVGNPSQPMVATSSRLQCKEEDNVLQGTEGDEFLECSHESANALQFPSTREMTSVDSQTVGGYRPNEECSLATDHSPSQASCSEPYYLAIDAVT 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48678g00001 156 Gene3D - 1 60 - -
Trme48678g00001 156 ProSiteProfiles Myb-like domain profile. 1 42 IPR001005 -
Trme48678g00001 156 SMART sant 1 44 IPR001005 -
Trme48678g00001 156 CDD SANT 1 39 IPR001005 -
Trme48678g00001 156 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 46 IPR017930 -
Trme48678g00001 156 Pfam Myb-like DNA-binding domain 1 39 IPR001005 -
Trme48678g00001 156 SUPERFAMILY Homeodomain-like 1 47 IPR009057 -
Trme48678g00001 156 PANTHER MYB PROTEIN-RELATED 1 104 - -
Trme48678g00001 156 FunFam Transcription factor MYB3R-2 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48678g00001 Trme-Chr48678 1 968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48678g00001 1 155 MYB Transcription Factor Family AT4G32730 48.765 1.17e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme48678g00001 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48678g00001 - K09420 aprc:113848458 220.32