Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4862g00001 ATGGGATACAATTTGTTTGAAGGTGAGATTCCTGCAGAATTTGGCAACATGACAAATCTTCAATATCTTGATTTAGCAGTAGGAACTCTCAGTGGACAAATTCCACCTGAATTAGGTAAGTTAAAGAAACTAACTACAATTTACTTATACCGAAACAAATTCACCGCAAAAATTCCGCCTCAACTTGGCAACATTATGTCACTAGAATTTCTAGACCTCTCTGACAATCAGCTCACGGGCGAAATACCAAAAGAACTTGCGAAATTGGAAAACCTGCAGCTTTTGAATTTGATGACCAATAAACTAACAGGTCATGTACCTGAGAAGCTTGGTGAATTGAAAAACTTAAAGGTTCTTGAGTTATGGAAAAATTCTTTAGAAGGCTCTTTGCCATTGAACCTTGGAAGAAATTCTCCTTTGCAGTGGTTAGATGTGTCCTCTAACTCATTGTCTGGTGAGATTCCTCCAGGTTTGTGTACAACAGGCAATCTCACTAAACTAATTCTCTTCAACAATTCATTCTCCGGTCCAATTCCAAGTGGACTTTCAAATTGTTCGTCGTTGGTGCGTGTTCGGATTCAAAACAATCTTATTTCCGGAACTATTCCGGTTGGATTCGGAAATCTTCTAAGCCTTCAACGGCTAGAGTTGGCGAAGAACAACCTCACTGGACAAATTCCTATTGATATTACCTCTTCCACATCACTTTCCTTCATTGATGTATCTTGGAACCACCTTGAGTCATCTTTACCTTCAGAAATTCTTTCTATTCCAACCCTTCAAACCTTCATTGCCTCTCACAACAGCTTTGGAGGAACTATCCCAGATGAGTTCCAAGGTTGTCCATCTCTCTCTGTGCTTGATCTTTCAAATGCAAATATCTCCGGTGCAATCCCGGAAAGTATAGCTTCTTGTCAAAAATTAGTCAACCTTAACCTTAGAAACAATCATTTGACAGGTGGAATACCAAAATCAATCACAAACATGCCAACCTTATCAGTTCTTGATCTGTCCAACAATTCACTGACTGGTCGGATACCTGAAAACTTCGGAAGCTCCCCGGCTCTCGAAACAATGAACCTGTCCTATAACAAACTGGAAGGGCCAGTACCCTCAAATGGGATTCTACTGACCATGAATCCTAACGATTTTATCGGCAATGCCGGTCTTTGCGGAGGCATTCTCCCTCCATGTTCTCATAGTTTGACCACGACAAGCCACAAAAGAAGCTCACACATCAGCCACATTATTATTGGTTTTTTTACCGGTATCTCGGTTATTTTATCTCTTGGTGCAGCATATTTTGGAGGCAAATGGTTATACAATAGATGTTATTTGTGTAATAGCTCCATCCATGATTGGTTCAAACATAACAATAAAGATTGGCCTTGGAGGTTAGTAGCATTCCAAAGGATCAGTTTCACAAGTAGTGAGATTCTAACTTGCATAAAGGAATCAAATGTCATAGGCATGGGTGGTGCTGGTATTGTTTACAAAGCTGAAATCCATAAACCTCAGATAACAGTAGCAGTGAAGAAACTATGGAGGTCAAGCACAGACATAGAAAATGGTGGGAATGATGTATTGAGAGAAGTGGAACTTCTGGGAAGATTGAGGCATAGGAATATTGTGAGGCTATTAGGGTATGTTCACAATGAAAGGGATGTGATAATGGTTTATGAGTACATGCCTAATGGAAACCTTGGAACAGCACTGCATGGTGAACAATCTGCAAGGTTGCTTGTAGATTGGGTCTCAAGGTATAACATAGCTCTTGGAGTTGCACAAGGGATGAACTACCTACACCATGATTGTCATCCATCAGTTATTCACAGGGATATCAAGTCTAATAACATACTCCTTGACGCGAATTTGGAGGCAAGGATAGCAGATTTCGGGTTGGCCAGAATGATGATTCAAAAGAATGAGACTGTTACAATGGTGGCTGGATCTTATGGTTATATTGCACCAG 1972 0.4031 MGYNLFEGEIPAEFGNMTNLQYLDLAVGTLSGQIPPELGKLKKLTTIYLYRNKFTAKIPPQLGNIMSLEFLDLSDNQLTGEIPKELAKLENLQLLNLMTNKLTGHVPEKLGELKNLKVLELWKNSLEGSLPLNLGRNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGPIPSGLSNCSSLVRVRIQNNLISGTIPVGFGNLLSLQRLELAKNNLTGQIPIDITSSTSLSFIDVSWNHLESSLPSEILSIPTLQTFIASHNSFGGTIPDEFQGCPSLSVLDLSNANISGAIPESIASCQKLVNLNLRNNHLTGGIPKSITNMPTLSVLDLSNNSLTGRIPENFGSSPALETMNLSYNKLEGPVPSNGILLTMNPNDFIGNAGLCGGILPPCSHSLTTTSHKRSSHISHIIIGFFTGISVILSLGAAYFGGKWLYNRCYLCNSSIHDWFKHNNKDWPWRLVAFQRISFTSSEILTCIKESNVIGMGGAGIVYKAEIHKPQITVAVKKLWRSSTDIENGGNDVLREVELLGRLRHRNIVRLLGYVHNERDVIMVYEYMPNGNLGTALHGEQSARLLVDWVSRYNIALGVAQGMNYLHHDCHPSVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVTMVAGSYGYIAP 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4862g00001 657 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 657 - -
Trme4862g00001 657 PRINTS Leucine-rich repeat signature 329 342 - -
Trme4862g00001 657 PRINTS Leucine-rich repeat signature 68 81 - -
Trme4862g00001 657 Pfam Leucine Rich Repeat 67 89 IPR001611 GO:0005515
Trme4862g00001 657 SUPERFAMILY Protein kinase-like (PK-like) 476 657 IPR011009 -
Trme4862g00001 657 FunFam Os07g0541700 protein 563 651 - -
Trme4862g00001 657 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 140 402 - -
Trme4862g00001 657 Gene3D Ribonuclease Inhibitor 1 138 IPR032675 -
Trme4862g00001 657 Gene3D Transferase(Phosphotransferase) domain 1 468 657 - -
Trme4862g00001 657 SUPERFAMILY RNI-like 3 319 - -
Trme4862g00001 657 ProSiteProfiles Leucine-rich repeat profile. 67 90 IPR001611 GO:0005515
Trme4862g00001 657 FunFam MDIS1-interacting receptor like kinase 1 483 566 - -
Trme4862g00001 657 Pfam Protein kinase domain 485 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4862g00001 657 SMART serkin_6 483 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4862g00001 657 Gene3D Ribonuclease Inhibitor 139 402 IPR032675 -
Trme4862g00001 657 ProSiteProfiles Protein kinase domain profile. 483 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4862g00001 657 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Trme4862g00001 657 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Trme4862g00001 657 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 8 108 - -
Trme4862g00001 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4862g00001 Trme-Chr4862 43 2014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4862g00001 1 657 Receptor kinase-like Gene Family AT1G08590 63.542 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme4862g00001 Pkinase 3.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4862g00001 - - gmx:100793873 1094.34