Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4861g00001 ATGGCAGCAACCCTTCAATTCATGATACAATTTTTGTTGTTCTTCTTTGTCCCAATGTTATCCCAAGTTGACCAACTCTTATATGCAGGATTCAAGAATATTAGTCCCAAAAGTTTAACCTTGAATGGAATTGCAGAAATAGATAGAAATGGAATGATAAGGTTAACAAATGAAACAAGCAGATTAATGGGTCATGCTTTTTATCCTTTACCTTTTCAGCTAAAGAACAAAACAACTGGTAAAGTTTTCTCTTTTTCTTCATCTTTTGCTCTTACTGTTGTTCCTGAATATCCTAAACTTGGTGGTCATGGCATGGCTTTCACAATAGCACCTTCAAAACATCTTAAAGCTTTACCTAGTCAATATCTTGGTCTTCTTAATTCAAGTGATGTTGGTAATTTCTCTAACCATCTTTTTGCCGTTGAGTTTGATACTGTTCAAGATTTTGAGTTTGGTGATATTAATGATAATCATGTTGGTATAAACATCAATAGTATGCACTCAAATGCATCTGTTACTGCTGGTTATTACAATGATGATTCTACTAAACAAGATCTTAGTATTAAAAGTGGGAAACCCATTTTAGTTTGGGTTGATTATGATTCTTCAATGAATCTTATTAGTGTTACACTTTCACCAACTTCAAATAAACCTAAAAAACCAATCTTGAATTTTAATGTGGATTTATCACATATTCTTCTTGATACTATGTATGTTGGTTTCTCTGCTTCAACTGGTTTGCTTGCTAGCTCTCATTACATTTTGGGTTGGAGTTTCAAAATCAATGGACCAGCCCCATTTCTTGATTTGTCTAAACTTCCACAACTTCCACAACCAAAGAAGAAAAACACTTCTTTGATAATTGGTGTTTCGGTCAAGGCTTCGGTTATTGCATTGTGTTCTGTAGCATTTGGTATTTACCTTTTCAGAAAAATCAAGTATGTTGATGTGATAGAGGATTGGGTGCTTGAAGTTGGGCCTCATAGATACTCTTATCAAGAGCTCAAGAAAGCTACAAAAGGTTTCAAGGAAAAACARTTACTTGGGMAGGGTKGTTTTRGCAAAGTTTAYAAAGGGACATTGCCGAAATCGAAGATTGAAGTAGCTGTTAAGAGAGTTTCACATGAATCAAAACAATGGCTGAGCGAATTCGTGTCTGAAATCGCTAGCATAGGCCGGCTTCGCCACCAGAATTTGGTTATGTTACTCGGGTGGTGTCGCCGCAGAGGCGAACTTTTACTTGTGTACGACTTCATGGCAAATGGAAGCTTAGACAAGTACTTGTTTGAAGATTCAAAATTTGTGCTAAGTTGGGAACAAAGGTTCAAGATAATAAAGGGTGTTGCTTCGGGTCTTTTGTAT 1362 0.3583 MAATLQFMIQFLLFFFVPMLSQVDQLLYAGFKNISPKSLTLNGIAEIDRNGMIRLTNETSRLMGHAFYPLPFQLKNKTTGKVFSFSSSFALTVVPEYPKLGGHGMAFTIAPSKHLKALPSQYLGLLNSSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGININSMHSNASVTAGYYNDDSTKQDLSIKSGKPILVWVDYDSSMNLISVTLSPTSNKPKKPILNFNVDLSHILLDTMYVGFSASTGLLASSHYILGWSFKINGPAPFLDLSKLPQLPQPKKKNTSLIIGVSVKASVIALCSVAFGIYLFRKIKYVDVIEDWVLEVGPHRYSYQELKKATKGFKEKQLLGXGXFXKVYKGTLPKSKIEVAVKRVSHESKQWLSEFVSEIASIGRLRHQNLVMLLGWCRRRGELLLVYDFMANGSLDKYLFEDSKFVLSWEQRFKIIKGVASGLLY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4861g00001 454 FunFam L-type lectin-domain containing receptor kinase S.4 22 266 - -
Trme4861g00001 454 Gene3D Transferase(Phosphotransferase) domain 1 328 454 - -
Trme4861g00001 454 SUPERFAMILY Protein kinase-like (PK-like) 315 454 IPR011009 -
Trme4861g00001 454 PANTHER - 42 454 - -
Trme4861g00001 454 FunFam Lectin-domain containing receptor kinase A4.3 327 418 - -
Trme4861g00001 454 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 281 IPR013320 -
Trme4861g00001 454 ProSiteProfiles Protein kinase domain profile. 342 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4861g00001 454 CDD lectin_legume_LecRK_Arcelin_ConA 25 263 IPR001220 GO:0030246
Trme4861g00001 454 Pfam Protein tyrosine and serine/threonine kinase 344 454 IPR001245 GO:0004672|GO:0006468
Trme4861g00001 454 Gene3D - 26 263 - -
Trme4861g00001 454 Pfam Legume lectin domain 26 273 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4861g00001 Trme-Chr4861 800 2161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4861g00001 21 454 Receptor kinase-like Gene Family AT3G55550 59.410 9.57e-175 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme4861g00001 Lectin_legB 2.1e-75 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4861g00001 - - gmx:100784346 667.151