Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48612g00001 ATGAATATTGCAATCGGGTCTGCTGAGGGAATTTTGTATCTTCATGTCCAAGCAACACCGCATATCATCCATAGGGATGTTAAAGCAAGCAATGTGTTACTGGATTCAGATTTCCAAGCACGTGTTGCTGATTTTGGTTTTGCCAAGTTGATCCCCGACGGAGCAACACATGTGACTACAAGAGTTAAAGGCACCCTTGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCCTTCTAGAACTTGCTAGCGGCAAAAAACCACTCGAAAAACTAAGCTCGTCAGTGAAACGGTCAATTAATGACTGGGCTCTACCATTAGCTTGTGAGAAAAAATTTAGCGAACTTGCTGATCCAAGACTTAATGGTGACTATTCTGAAGAAGAGCTTAAAAGGGTTGTATTAGTTGCTCTAATATGTGCTCAGAGTCAGCCGGAGAAGAGACCAACGATGCTCGAGGTGGTAGAGCTACTGAAGGGAGAATCGAAAGAGAAGGTTTCTCAGTTGGAGAATAATGAACTCTTTAAGAACCCTCTTGCTGTTGGAAATAACAATGATGAGATATCAGCTGCTGAAGGGAGTTCAGACTTCATCTCAGAAGAGAAGGAATCTAAACATGAGAATACAGAATCTTGA 675 0.4163 MNIAIGSAEGILYLHVQATPHIIHRDVKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSSVKRSINDWALPLACEKKFSELADPRLNGDYSEEELKRVVLVALICAQSQPEKRPTMLEVVELLKGESKEKVSQLENNELFKNPLAVGNNNDEISAAEGSSDFISEEKESKHENTES 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48612g00001 224 Pfam Protein kinase domain 7 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48612g00001 224 MobiDBLite consensus disorder prediction 190 224 - -
Trme48612g00001 224 FunFam PTI1-like tyrosine-protein kinase At3g15890 1 187 - -
Trme48612g00001 224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 22 34 IPR008271 GO:0004672|GO:0006468
Trme48612g00001 224 ProSiteProfiles Protein kinase domain profile. 1 188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48612g00001 224 MobiDBLite consensus disorder prediction 190 205 - -
Trme48612g00001 224 MobiDBLite consensus disorder prediction 209 224 - -
Trme48612g00001 224 SUPERFAMILY Protein kinase-like (PK-like) 2 171 IPR011009 -
Trme48612g00001 224 Coils Coil 165 185 - -
Trme48612g00001 224 Gene3D Transferase(Phosphotransferase) domain 1 1 189 - -
Trme48612g00001 224 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 2 189 - -
Trme48612g00001 224 SMART serkin_6 1 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48612g00001 Trme-Chr48612 73 825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48612g00001 3 189 Receptor kinase-like Gene Family AT4G33430 46.316 1.73e-52 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trme48612g00001 Pkinase 6.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48612g00001 - - gmx:100788153 392.504