Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme485g00001 ATGAATGTTGGATCTAATGATCAAGTGCAGATACTGGGGATATGTGGTCTTGGAGGAATGGGTAAGACAACACTTGCAAAATCAGTTTATAATTTCATTGCTGACCAATTTGAATGTGTGTGTTTTCTTCACAATGTGAGAGAAAATTCAGCAAAACATGGTTTAGAGCATCTCCAGAAAGAGTTGCTTTCCAAAATTCTTGGATTGGACATTAAATTAGGAGATAGTAGTGAGGGAATTCCAATCATAAAGCAAAGGCTACACCGAAAGAAGGTTCTATTGATTCTCGATGACATTAACAAATTGAAGCAGCTCCAGGCTTTGGCTGGAGGGCTTGATTGGTTCGGTGCTGGCAGTAGAGTGATCGTCACCACTCGAGACAAAAACTTGCTAGCAAGTCATGGGATTGAAGTAATATATGAAATCGATGAGTTAAATAAGGAAGAAGCTCTTGAACTCCTTAGGTGGAAGGCTTTTAAAACTAACAAAATTGATTCAAGTTACAAGGACATTTTAAACCGTGCGGTAAATTATGCTTGCGGCATTCCATTGGCCTTAGAAATATTAGGTTCCAATTTGTTTGGAAAGCATATAGAAGAGTGGAATTCTTTGTTGGATAAATATGAAAGGATTCCAAATGAAGAGATTCAAAAAATACTTAAAGTGAGTTTTGATGCTTTGGAGGAAGATGAACAAAGTGTTTTTATCGATATTGCTTGTTGCTTCAAAGGTTATAAATTGAAAGAGGTGGAAAATATGCTTTGTTCTCATTATGGTCAATGCATGAAATATCATATTGGAGTGTTGGTTAAAATATCTCTTGTAAAGATTTCTCAATGGGGCTATGTAACATTACATGACTTGATAGAAGACATGGGTAAAGAAATTGTAAGACAAGAATCACCAAAAGAGCCTGGAAAGCGTAGCAGGTTACCATGTAGCATTCTCATGATGCCAAAATTGTCTTGGATTCTTGTTCATGGTCGCCATCTATTACCAAAAGAAAGTGATAAACCAAGTTCCATCGTGTCCTCAAAAGTAAAATCTCTTGTGCTGATAGAATGCAACCTAACAGGTGAATCTCTTCCAATAGTTCTCAAGTGGTTTGCTAATGTGACAAATTTAAACTTATCGAAAAGTAATTTCACAATTCTTCCGGAATGCATCAAGGAACATCGCTCTTTAAGTAGACTCTATCTGGATGATTGCAAGTTTCTTCAAGAAATTAGAGGGATTCCGCCAAATTTAAAATTCTTGTCTGCATTAAATTGTGAGTCTTTGAGTTCCTCATGTAGAAGCATGCTACTGAACCAGGAACTACATGAAGTTGGAGACACCATGTTTCGTTTGCCAGGAACTTCAAGGATTCCAGAGTGGTTTGAGCACCAAAGCACAGGACAGTCAAATTCTTTCTGGTTTCATAAGAAGCTCCCTTCCATTGCTTTCTTTTGTGCTATTGGATTTCAGGCCAATCACAAAACTACCGGTGCTCTACAGCATAGATTCACGGGCATGAACATTCTGATCAGGAACGATTATTCCAGCTCCAATCCAACAATGCATTCATTGGATGATATTGTGAACGATTATTCAATGATCAACGCTATCAACGCAGATAACGGGCGGCAGGACTGGAATTAA 1641 0.3778 MNVGSNDQVQILGICGLGGMGKTTLAKSVYNFIADQFECVCFLHNVRENSAKHGLEHLQKELLSKILGLDIKLGDSSEGIPIIKQRLHRKKVLLILDDINKLKQLQALAGGLDWFGAGSRVIVTTRDKNLLASHGIEVIYEIDELNKEEALELLRWKAFKTNKIDSSYKDILNRAVNYACGIPLALEILGSNLFGKHIEEWNSLLDKYERIPNEEIQKILKVSFDALEEDEQSVFIDIACCFKGYKLKEVENMLCSHYGQCMKYHIGVLVKISLVKISQWGYVTLHDLIEDMGKEIVRQESPKEPGKRSRLPCSILMMPKLSWILVHGRHLLPKESDKPSSIVSSKVKSLVLIECNLTGESLPIVLKWFANVTNLNLSKSNFTILPECIKEHRSLSRLYLDDCKFLQEIRGIPPNLKFLSALNCESLSSSCRSMLLNQELHEVGDTMFRLPGTSRIPEWFEHQSTGQSNSFWFHKKLPSIAFFCAIGFQANHKTTGALQHRFTGMNILIRNDYSSSNPTMHSLDDIVNDYSMINAINADNGRQDWN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme485g00001 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 238 IPR027417 -
Trme485g00001 546 SMART AAA_5 8 145 IPR003593 GO:0016887
Trme485g00001 546 Gene3D - 1 138 IPR027417 -
Trme485g00001 546 PRINTS Disease resistance protein signature 11 26 - -
Trme485g00001 546 PRINTS Disease resistance protein signature 179 193 - -
Trme485g00001 546 PRINTS Disease resistance protein signature 390 406 - -
Trme485g00001 546 PRINTS Disease resistance protein signature 86 100 - -
Trme485g00001 546 Gene3D - 144 228 IPR042197 -
Trme485g00001 546 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 438 IPR044974 GO:0006952
Trme485g00001 546 SUPERFAMILY RNI-like 311 435 - -
Trme485g00001 546 Pfam NB-ARC domain 6 226 IPR002182 GO:0043531
Trme485g00001 546 SUPERFAMILY "Winged helix" DNA-binding domain 215 301 IPR036390 -
Trme485g00001 546 Gene3D Ribonuclease Inhibitor 307 465 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme485g00001 Trme-Chr485 962 4082 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme485g00001 9 315 WRKY Transcription Factor Family AT5G45050 32.803 1.31e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme485g00001 - - tpra:123910163 499.204