Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48593g00001 ATGAGTGAAGATGGATCAAGGGGAAGGCTCAAGGACGACGGCGGACATGTCCGGTATCGAGGAGTTCGTTGCCGTCCATGGGGAAAGTTTGCGGCCGAAATTCGTGACTCCAATAGGCAAGGTCAGAGGGTTTGGCTTGGAACTTTCAACACTGCCGAGGAAGCGGCTAGAGCWTATGATAGAGCTGCTTACAATATGAGAGGTTCATTTGCAATCCTTAATTTTCCAAATGAATACAATATGCCAACCCATGCCCGTTCCGGTGCCACTTCTGCTTCATCTTCTTCGTCTTCTTCTTCAAGGGATACAAATGTGGAAGGAAGAGGAAAACAAGTGTTTGAGATTGAGTACTTGGATGATAAGTTGTTGGAAGAGCTTCTTGATTTTGAAGA 392 0.4592 MSEDGSRGRLKDDGGHVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTAEEAARAYDRAAYNMRGSFAILNFPNEYNMPTHARSGATSASSSSSSSSRDTNVEGRGKQVFEIEYLDDKLLEELLDFE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48593g00001 130 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Trme48593g00001 130 PANTHER DNA-BINDING DOMAIN 18 123 IPR044808 GO:0003700|GO:0009873
Trme48593g00001 130 MobiDBLite consensus disorder prediction 82 106 - -
Trme48593g00001 130 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Trme48593g00001 130 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Trme48593g00001 130 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Trme48593g00001 130 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Trme48593g00001 130 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Trme48593g00001 130 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Trme48593g00001 130 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Trme48593g00001 130 MobiDBLite consensus disorder prediction 82 107 - -
Trme48593g00001 130 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48593g00001 Trme-Chr48593 1 392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48593g00001 13 130 AP2-EREBP Transcription Factor Family AT3G23230 65.574 1.26e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme48593g00001 AP2 5.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48593g00001 - - vvo:131618321 165.622