Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4858g00001 ATGAGACCAATTCTGATGAAAGGCCATGAAAGGCCTTTAACATTCCTTAAGTACAACAGAGATGGCGATCTTCTATTTTCTTGCGCCAAAGATCACAACCCCACCGTCTGGTTTGCCGACAACGGCGAACGCTTAGGAACTTATCGAGGCCATAATGGTGCTGTTTGGTGCTGCGATGTCACAAGAGATTCGGGTCGACTCATTACTGGCAGCGCTGACCAGACGGCAAAGCTGTGGAATGTGCAAACTGGTCAACAATTGTTCACCTTCAATTTTGATTCCCCAGCAAAGTCTGTCGACTTTTCTGTCGGTGATAAGCTGGCAGTCATCACCACCGACCCCTTTATGGAACTTTCTTCAGCAATCCATATCAAACGCATTGCTAAAGATCCTGCAGATCAAACTGGGGAGTCTGTGCGTGTCATTAAGGGCCCACAGGGTAGAATCAATAGAGCCGTTTGGGGACCCCTCAATCAAACCATTATCAGTGGTGGAGAAGACTCTATCCTTCGAATTTGGGATACTGAGGCATTCCTTCTTTCCTATATATTTATTTATGTTGCAACACTCACTATCATATCATCAACCGCAATTATTTCATTCTATTTCACTTACTTGCAGACCGGAAAACTACTTAAGGAAACAGACAAGGAATCTGGCCACAAAAAGACAATAACCTCACTTGTTAAATCTGCGGATGGATCACATTTCCTAACCGGCTCCCTTGATAAGTCTGCTAAGCTTTGGGATAGCAGAACATTGACTCTTATCAAGACATATGTGACCGGTAGCCCTGTCAATGGAGTTGCAATGTCCCCCCTTCTTGATCAT 831 0.4465 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVTRDSGRLITGSADQTAKLWNVQTGQQLFTFNFDSPAKSVDFSVGDKLAVITTDPFMELSSAIHIKRIAKDPADQTGESVRVIKGPQGRINRAVWGPLNQTIISGGEDSILRIWDTEAFLLSYIFIYVATLTIISSTAIISFYFTYLQTGKLLKETDKESGHKKTITSLVKSADGSHFLTGSLDKSAKLWDSRTLTLIKTYVTGSPVNGVAMSPLLDH 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4858g00001 277 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Trme4858g00001 277 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Trme4858g00001 277 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 176 - -
Trme4858g00001 277 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 277 - -
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Trme4858g00001 277 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Trme4858g00001 277 Pfam WD domain, G-beta repeat 137 174 IPR001680 GO:0005515
Trme4858g00001 277 Pfam WD domain, G-beta repeat 219 250 IPR001680 GO:0005515
Trme4858g00001 277 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Trme4858g00001 277 SUPERFAMILY WD40 repeat-like 4 273 IPR036322 GO:0005515
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 176 IPR001680 GO:0005515
Trme4858g00001 277 Gene3D - 188 277 IPR015943 GO:0005515
Trme4858g00001 277 Gene3D - 1 183 IPR015943 GO:0005515
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Trme4858g00001 277 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 253 - -
Trme4858g00001 277 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Trme4858g00001 277 SMART WD40_4 1 38 IPR001680 GO:0005515
Trme4858g00001 277 SMART WD40_4 208 250 IPR001680 GO:0005515
Trme4858g00001 277 SMART WD40_4 135 174 IPR001680 GO:0005515
Trme4858g00001 277 SMART WD40_4 41 80 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4858g00001 Trme-Chr4858 400 1673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4858g00001 1 277 Eukaryotic Initiation Factors Gene Family AT2G46290 68.817 8.93e-140 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4858g00001 K03246 - gmx:100793485 454.521