Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48589g00001 ATGGCAAGGATGGTATCCCGACCCAGGATACCGCCAGCTTTAGTACCCAACACYGCAAYTGGRTTCATTGCAAAGGCAATGACATTTGAGAACACWKCCGGTCCTGATGGTCATCAAGYTGTTGCTTTGAGAAACMWMGGAGATATGGCTGCTTTCGTTGGTTGCCATATCTTAGGTTACCAAGACACCTTGTACACTCAATCCAACAGGCAATTCTATCGCGATTGTGTTATCTCTGGTACCATCGATTTCATCTTTGGAACATCTTCCACCTTGATCCAACACTCTGTGATCACCGTAAGGAAGCCCAATAAGGATCAATTCAATGCAATTACCGCTGACGGATCAGAGGATTCTAAGGCTTTGTACACTGGTATTGTGATCCAGGACTGCCAGATCGTCACAGAGGCAACATTGTTCCCTGTAAGGTTCCAATACGCTACTTACTTGGGCAGACCATGGAAGGCATATTCAAGGACAGTCTTCATGGAATCCGCCATGGGTGACTTTATTCATCCAGATGGATGGGTCCCTTGGTCAGGTAAGCACTTTGAGGACACGTGTTACTATGCAGAGTATGCCAACACTGGACCTGGTGCCAATATTGCCAAAAGGATCAAGTGGAAGGGTTATCACGGTGCCATTAGCCAGGCCGAGGCTACAAGATTCACCGCTGCTGAATGGCTCAAGGCTGGACCCAATTCCGGAACCGACTGGTTGAAGGATCTTCATGTTCCTCACTACCTTGGCTTCAAAGCTTCAAAAATTAATTAA 774 0.4638 MARMVSRPRIPPALVPNTAXGFIAKAMTFENTXGPDGHQXVALRNXGDMAAFVGCHILGYQDTLYTQSNRQFYRDCVISGTIDFIFGTSSTLIQHSVITVRKPNKDQFNAITADGSEDSKALYTGIVIQDCQIVTEATLFPVRFQYATYLGRPWKAYSRTVFMESAMGDFIHPDGWVPWSGKHFEDTCYYAEYANTGPGANIAKRIKWKGYHGAISQAEATRFTAAEWLKAGPNSGTDWLKDLHVPHYLGFKASKIN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48589g00001 257 ProSitePatterns Pectinesterase signature 2. 78 87 IPR033131 -
Trme48589g00001 257 PANTHER PECTINESTERASE 19 241 - -
Trme48589g00001 257 Pfam Pectinesterase 15 230 IPR000070 GO:0030599|GO:0042545
Trme48589g00001 257 Gene3D - 10 251 IPR012334 -
Trme48589g00001 257 SUPERFAMILY Pectin lyase-like 15 230 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48589g00001 Trme-Chr48589 79 927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48589g00001 13 251 Carbohydrate Esterase AT2G47030 49.791 1.39e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48589g00001 K01051 - gmx:100781507 357.836