Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48576g00001 ATGTGTTTCTTTATGGACATTCAACTTGGGAATAGCATTGCCTTTGTCCAGTTTCCTCTAAGATTTGATAGTCTTGATAGAAATGATCGCTATGCCAACAAAAACACTATTTTATTTGATATTAACTTGAGGTGTTTGGATGGAATTCAAGGACCTGTTTATATTGGATCAGGTTGTATATTCAGAAGGAAAGCCTTAAATGGCTTCGATCCTCCTAAAGCGGCAAAGCGCTCTCAAATCGTACAAGTACACTCAAAACAAGATGAAAATGGAGAGGATGAAAGCATTATAGAAGCAACAGATGAAGACAAGCAGCTATTGCAATCAGATATGAATACTGAAAACAAATTTGGAAAGTCTACACTCTTCATGAATTCTTCATTAACAGAAGAAGGTGGTGTGGATCCTTCTTCAACTCAAGAAGCCTTACTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTACGAAGACCGAACACTTTGGGGATACGAG 492 0.376 MCFFMDIQLGNSIAFVQFPLRFDSLDRNDRYANKNTILFDINLRCLDGIQGPVYIGSGCIFRRKALNGFDPPKAAKRSQIVQVHSKQDENGEDESIIEATDEDKQLLQSDMNTENKFGKSTLFMNSSLTEEGGVDPSSTQEALLKEAIHVMSCSYEDRTLWGYE 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48576g00001 164 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 75 IPR029044 -
Trme48576g00001 164 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 163 - -
Trme48576g00001 164 Pfam Cellulose synthase 1 81 IPR005150 GO:0016020|GO:0016760|GO:0030244
Trme48576g00001 164 Pfam Cellulose synthase 89 163 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48576g00001 Trme-Chr48576 25 835 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48576g00001 1 164 Cell Wall Biosynthesis AT5G17420 52.247 2.43e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48576g00001 K10999 - gmx:100777270 280.026