Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4854g00001 ATGCCCGGGACACGACAGAAAGATGCAACTGCCCAAAATTCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAACCGACAAATTCTGGTGAGCAGGTAGATCTTAATGTGGACAATGATCAAGAGGAGACCTCAGAGGAAGAGGTTGAGTATGAAGAGATAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAGGAAGAAGAGGAAGACGAAGCAGAGGAAGAGAATAAGCCCTCAGATGGTGAAGATGCGATGAGAGTGGAAGATGAGGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCGTGAAGTTTCTGAAAAAGATTTAAAGGTGTTTTGTCAATCTGTGGGAGAAGTGGCACAGGTCAGGATTATGAAAGGGAAAGAATCAAATGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATGGAGGAGCTGAACAATTCTGAATTTAAGGGGAAAAGAATAAAGTGCTCACCATCTCAAGTTAAGCATAGGTTATTCATTGGTAATGTTCCTAAAGATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCTAAAGTTGGCCCTGGAGTCATTTCTGTGGAACTATTGAAGGATCCACAGGGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCACAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCAGCATCCTCTCAG 834 0.4281 MPGTRQKDATAQNSESPGGNSEPEKPTNSGEQVDLNVDNDQEETSEEEVEYEEIEVEEEVEEEEEEEEEEEDEAEEENKPSDGEDAMRVEDEVEKKKHAELLALPPHGSEVYIGGIPREVSEKDLKVFCQSVGEVAQVRIMKGKESNGYAFVTFKTKELASKAMEELNNSEFKGKRIKCSPSQVKHRLFIGNVPKDWTVEDMKKVVAKVGPGVISVELLKDPQGSSRNRGFAFIEYHNHACAEYSRQKMSNSQFKLDNNAPTVSWADPRNSESSASSQ 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4854g00001 278 SMART rrm1_1 187 264 IPR000504 GO:0003723
Trme4854g00001 278 SMART rrm1_1 110 180 IPR000504 GO:0003723
Trme4854g00001 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 178 IPR000504 GO:0003723
Trme4854g00001 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 255 IPR000504 GO:0003723
Trme4854g00001 278 Gene3D - 30 185 IPR012677 -
Trme4854g00001 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 184 IPR000504 GO:0003723
Trme4854g00001 278 Coils Coil 37 80 - -
Trme4854g00001 278 Gene3D - 186 267 IPR012677 -
Trme4854g00001 278 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 274 - -
Trme4854g00001 278 MobiDBLite consensus disorder prediction 252 278 - -
Trme4854g00001 278 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Trme4854g00001 278 MobiDBLite consensus disorder prediction 36 80 - -
Trme4854g00001 278 CDD RRM_SF 111 180 - -
Trme4854g00001 278 SMART rrm2_1 110 180 IPR003954 GO:0003676
Trme4854g00001 278 SUPERFAMILY RNA-binding domain, RBD 106 270 IPR035979 GO:0003676
Trme4854g00001 278 MobiDBLite consensus disorder prediction 1 94 - -
Trme4854g00001 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Trme4854g00001 278 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4854g00001 Trme-Chr4854 135 1458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4854g00001 109 249 Eukaryotic Initiation Factors Gene Family AT1G49760 28.105 5.81e-11 60.8