Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48548g00001 ATGCCACGTGGCACGTCAAAGAATTCAAATTCATCAACTACACAGGGGTATGTTAATCAAGGTAGGAGGGTGCCAAAAGAAGNTGTTGGAATTTCAGGTGAGTTAGATACCATGATCAATGATCATCAAAAATCTAACTCCAAAGGAAGTACTTTTGTTCGCGCTTCTTCTGGCAATGTTATGTTGTATGGACATTTAGGTAATCTTAGACAAGGAGCTAAAGATAATAGTTATTCAAATGCAATGGATAATTATAACCAATACTTCGAAAATGCAAATTCAAATGTTGGAGGAAACACAAAGAATGTGTCGAGTATTAATAAAGAGACAAAATCCTCGACGAAGTTGAAGGAAGAAAATACGGGTGGTGGTTCACTTTGTAGAGCTATATCAACTAGAATGGATCCAGAGCAGTTGAAGATAATGGGGAACGAGGATTATAAGAATGGACGATTTGCGGAGGCGTTATCTTTGTATGATGCAGCTATTGCAATTGATCCTAAAAAGGCTGCTTATAGAAGTAATAGAAGCGCTGCTTTAACTGCTCTTGGTAGGCTTCTTGAAGCTGTGTTTGAATGTAGGGAAGCTATTCGAATTGATCCTCATTATCATAGAGCTCATCATCGTTTAGGAAGTTTGCATTTTAGGTAG 651 0.3779 MPRGTSKNSNSSTTQGYVNQGRRVPKEXVGISGELDTMINDHQKSNSKGSTFVRASSGNVMLYGHLGNLRQGAKDNSYSNAMDNYNQYFENANSNVGGNTKNVSSINKETKSSTKLKEENTGGGSLCRAISTRMDPEQLKIMGNEDYKNGRFAEALSLYDAAIAIDPKKAAYRSNRSAALTALGRLLEAVFECREAIRIDPHYHRAHHRLGSLHFR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48548g00001 216 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 216 IPR044534 -
Trme48548g00001 216 SMART tpr_5 170 203 IPR019734 GO:0005515
Trme48548g00001 216 SMART tpr_5 136 169 IPR019734 GO:0005515
Trme48548g00001 216 MobiDBLite consensus disorder prediction 1 20 - -
Trme48548g00001 216 MobiDBLite consensus disorder prediction 1 52 - -
Trme48548g00001 216 Gene3D Tetratricopeptide repeat domain 129 216 IPR011990 GO:0005515
Trme48548g00001 216 ProSiteProfiles TPR repeat profile. 136 169 IPR019734 GO:0005515
Trme48548g00001 216 SUPERFAMILY TPR-like 137 215 IPR011990 GO:0005515
Trme48548g00001 216 MobiDBLite consensus disorder prediction 90 122 - -
Trme48548g00001 216 MobiDBLite consensus disorder prediction 90 110 - -
Trme48548g00001 216 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48548g00001 Trme-Chr48548 103 753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48548g00001 137 211 U-box Gene Family AT3G07370 34.667 8.39e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48548g00001 - - lang:109326248 265.388