Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme485348g00001 ATGCCAAATGGGTCTTTGGATTCATGTCTGTTTCAAGAAAAGGTATTGGATTGGAAAGTAAGATACCAAATTGCTCTCGGAATAGCTAGAGGATTGAGTTATCTTCATGAAAAGTGTAGAGACTGTATCATTCACTGCGACGTGAAGCCGGAAAACATTCTCTTAGATACTGATTTTTGTCCAAAGGTAGCAGATTTCGGCCTTGCAAAGCTTGTCGGAAGGGACTTCAGCAGGGTCCTCACTACCATGAGAGGAACA 258 0.4225 MPNGSLDSCLFQEKVLDWKVRYQIALGIARGLSYLHEKCRDCIIHCDVKPENILLDTDFCPKVADFGLAKLVGRDFSRVLTTMRGT 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme485348g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
Trme485348g00001 86 Pfam Protein kinase domain 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme485348g00001 86 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 86 - -
Trme485348g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 1 86 IPR011009 -
Trme485348g00001 86 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
Trme485348g00001 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme485348g00001 86 FunFam Protein kinase superfamily protein 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme485348g00001 Trme-Chr485348 1 258 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme485348g00001 3 86 Receptor kinase-like Gene Family AT5G20050 51.613 3.25e-26 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme485348g00001 Pkinase 7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme485348g00001 - - pvu:PHAVU_011G109100g 162.925