Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48487g00001 ACCTATTCATATGTTGCTGTATGGAATGAGCAAAACAATAGAGCTGAAATCATACACAATGATCAAGGAAACAACACCACACCCTCTTTTGTTGCTTTTACCGACTCCCAAAGGTTGGTCGGTGATGCTGCCACGAATCAGGCTGCTTCAAATCCAGCAAACACTGTCTTTGATGCGAAGAGGTTAATCGGAAGAAAGTATAGTGATTCAAATGTTCAAAATGATATTATGTTCTGGCCCTTTAAGGTCATTGCTGGTACAGATGACAACCCTTTGATCGTTGTTAAGTACAAGGGCGAGGAAAAGCAGTTTGTTGCAGAAGAAATATCATCAATGATACTCACAAAGATGCGAGAGATTGCAGAGAAATTTTTGGAGTCACCGGTTAAAAATGCAGTGATCACAGTTCCTGCTTATTTTAATGATTCTCAACGAAAAGCCACCAAAGATGCTGGAGCCATTGCTGGCCTAACTGTGATGCGGATAATCANCAGTTCCTGCTTATTTTAA 510 0.4039 TYSYVAVWNEQNNRAEIIHNDQGNNTTPSFVAFTDSQRLVGDAATNQAASNPANTVFDAKRLIGRKYSDSNVQNDIMFWPFKVIAGTDDNPLIVVKYKGEEKQFVAEEISSMILTKMREIAEKFLESPVKNAVITVPAYFNDSQRKATKDAGAIAGLTVMRIIXSSCLF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48487g00001 169 Pfam Hsp70 protein 1 163 IPR013126 GO:0005524|GO:0140662
Trme48487g00001 169 PRINTS 70kDa heat shock protein signature 22 34 - -
Trme48487g00001 169 PRINTS 70kDa heat shock protein signature 132 152 - -
Trme48487g00001 169 PRINTS 70kDa heat shock protein signature 44 52 - -
Trme48487g00001 169 Gene3D - 57 108 - -
Trme48487g00001 169 FunFam heat shock 70 kDa protein-like 57 112 - -
Trme48487g00001 169 SUPERFAMILY Actin-like ATPase domain 1 164 IPR043129 -
Trme48487g00001 169 Gene3D - 1 166 - -
Trme48487g00001 169 PANTHER HEAT SHOCK PROTEIN 70KDA 1 164 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48487g00001 Trme-Chr48487 1 633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48487g00001 1 163 Calmodulin-binding Proteins AT3G12580 74.233 2.95e-82 253