Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4847g00001 TATGGAACAAACACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTAAGCTGTGGTTCTTGTTTTGAGATTATGTGTGTTGGTGACCGTAAATGGTGTCTTCCTGGTTCCATTTTGGTTACTGCTACTAATTTCTGTCCACCAAACAATGCCTTACCTAATAATAATGGTGGATGGTGTAACCCTCCTTTGCATCACTTTGATCTTGCTCAACCTGTTTTTTTGAGAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAATTTAGTTCTAGTAACAAACGTGGGAGGTGCTGGAGATGTACATTCAGTGGCTATTAAAGGATCAAGAACAGGGTGGATGCCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACAATTATCTCAATGGCCAAACTTTGTCTTTCAAGGTCACAACAAGTGATGGTAAAACAGTAATTTCCAACAATGTTGCCCCAGCTGGTTGGTCATTTGGTCAAACCTACACTGGTGCTCAATTCCGCTAG 582 0.4141 YGTNTAALSTALFNSGLSCGSCFEIMCVGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQTLSFKVTTSDGKTVISNNVAPAGWSFGQTYTGAQFR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4847g00001 193 PANTHER EXPANSIN-A15 1 192 IPR002963 GO:0009664
Trme4847g00001 193 Gene3D - 100 192 IPR036749 -
Trme4847g00001 193 PRINTS Expansin/Lol pI family signature 137 151 IPR007118 GO:0005576
Trme4847g00001 193 PRINTS Expansin/Lol pI family signature 9 27 IPR007118 GO:0005576
Trme4847g00001 193 PRINTS Expansin/Lol pI family signature 83 99 IPR007118 GO:0005576
Trme4847g00001 193 PRINTS Expansin/Lol pI family signature 175 189 IPR007118 GO:0005576
Trme4847g00001 193 PRINTS Expansin signature 58 75 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 175 191 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 27 38 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 146 167 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 99 111 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 111 132 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 75 88 IPR002963 GO:0009664
Trme4847g00001 193 PRINTS Expansin signature 39 49 IPR002963 GO:0009664
Trme4847g00001 193 SUPERFAMILY PHL pollen allergen 97 189 IPR036749 -
Trme4847g00001 193 Pfam Lytic transglycolase 5 90 IPR009009 -
Trme4847g00001 193 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 110 189 IPR007117 -
Trme4847g00001 193 Gene3D - 1 96 IPR036908 -
Trme4847g00001 193 FunFam Expansin 100 192 - -
Trme4847g00001 193 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 100 IPR007112 -
Trme4847g00001 193 Pfam Expansin C-terminal domain 101 178 IPR007117 -
Trme4847g00001 193 SMART dpbb_1 5 90 IPR007112 -
Trme4847g00001 193 SUPERFAMILY Barwin-like endoglucanases 1 118 IPR036908 -
Trme4847g00001 193 CDD DPBB_EXPA_N 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4847g00001 Trme-Chr4847 1 1248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4847g00001 1 193 Expansin Gene Family AT2G03090 86.010 3.44e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4847g00001 - - gmx:100796316 373.629