Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48477g00001 ATGGATACTTCAAATCCTGCTGCGTTTGTCAATGCCCAGTCTCTTCCCAATTTCATTGGAAAGAAAGTAAGAACAGTGGTTCAGGTGAATCATTCTGATGGCGTGACAATCACAGGGAAATCCACCGATGACTCTCAGATAACTGTAAAAGGGTTATCATCACAAGTCCCAGTCATGAATCATGTTGAAGTTATTGGCATTGCTGAAAGTAACAACTCTATCCGCGCTGAAATTTTTACAGACTTTGGTGCCACATTTG 259 0.4131 MDTSNPAAFVNAQSLPNFIGKKVRTVVQVNHSDGVTITGKSTDDSQITVKGLSSQVPVMNHVEVIGIAESNNSIRAEIFTDFGATF 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48477g00001 86 Pfam Replication factor A protein 3 1 85 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trme48477g00001 86 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 86 - -
Trme48477g00001 86 Gene3D - 2 86 IPR012340 -
Trme48477g00001 86 SUPERFAMILY Nucleic acid-binding proteins 5 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48477g00001 Trme-Chr48477 12 270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48477g00001 1 86 Core DNA Replication Machinery Family AT3G52630 59.302 9.86e-31 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48477g00001 K10740 - gmx:100781484 129.028