Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48472g00001 GTAATTGGTTTAAGAGATGTTATTCCTCCACCCTTGCGTAGAGAGTTTAATGATGTCTACATAACTACTGAACTCATGGATACTGATCTTCACCAAATCATTCGCTCCAATCAAAATCTGTCAGATGAACACTGTCAGTACTTTTTGTATCAGATTCTTCGTGGGCTAAGGTATATACATTCTGCAAACATAATCCATAGAGATTTGAAACCAAGCAACCTGTTGTTGAATGCAAATTGTGACTTGAAGATTATTGATTTTGGTCTTGCGCGGCCAACTATGGAAAGTGACTTCATGACAGAATATGTAGTCACAAGATGGTATAGGGCTCCTGAGTTGTTGTTGAACTCCTCAGATTACACCTCTGCTATAGATGTTTGGTCTGTTGGTTGCATTTTTATGGAGCTCATGAATAAAAAGCCTCTTTTTCCTGGCAAAGACCATGTGCATCAGATGCGCTTATTGACAGAGGTAAGACTATACAAATCAGCATAA 495 0.3859 VIGLRDVIPPPLRREFNDVYITTELMDTDLHQIIRSNQNLSDEHCQYFLYQILRGLRYIHSANIIHRDLKPSNLLLNANCDLKIIDFGLARPTMESDFMTEYVVTRWYRAPELLLNSSDYTSAIDVWSVGCIFMELMNKKPLFPGKDHVHQMRLLTEVRLYKSA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48472g00001 164 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 158 - -
Trme48472g00001 164 ProSitePatterns Serine/Threonine protein kinases active-site signature. 64 76 IPR008271 GO:0004672|GO:0006468
Trme48472g00001 164 Gene3D Phosphorylase Kinase; domain 1 1 36 - -
Trme48472g00001 164 SUPERFAMILY Protein kinase-like (PK-like) 1 158 IPR011009 -
Trme48472g00001 164 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48472g00001 164 SMART serkin_6 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48472g00001 164 FunFam Mitogen-activated protein kinase 26 161 - -
Trme48472g00001 164 Pfam Protein kinase domain 15 151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48472g00001 164 Gene3D Transferase(Phosphotransferase) domain 1 37 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48472g00001 Trme-Chr48472 282 890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48472g00001 1 158 MAP Kinase Gene Family AT3G45640 89.241 6.84e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trme48472g00001 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48472g00001 K20536 - gmx:100801339 316.62