Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4846g00001 GATGAAACAGAAGCTGATATGAGGAGGCTGAAGCTTGAGTTAAAACAAACGATGGAAATGTACAATACAGCATGCAGAGAAGCGCTTACAGCACAACACAAGTTAATGGAGATGAGCCACTGGAAAATTGAAGAAGAAAAGAAATTAGAAGAGGCACGACTGTCCCAAGAAGCTGCAATGGCAATAGCAGAGAAAGAGAAAGCAAGAAGTAAGGCAGCCATGGAAACAGCTGAAGCAGCTAGAAAAATTGCAAACGTGGAATTACATAGAAAATCAAGGGTTCCAGTTAAATCTCTTAAAGAAGCAGAGGACATGAGGAAGCTATTGGATAATTTAGCCCAAACTGATGTAAGATATAGGAGATACAGTATTGAGGAGATTGAAGCCGCCACAAACATGTTTTCTGAAAAACTAAAAATTGGGGAAGGTGGTTATGGACCTGTTTATAAATGTTACCTTGATCACACTCCAGTGGCCGTGAAGGTTTTAAGTCCTGATGCGGCTCAAGGGAAATCACAGTTTCAGCAAGAGATAGTTATCCCTCCACAGGTTGACATACTGAGCTGTATGCGCCACCCAAACTTGGTGCTTCTTTTAGGAGCGTGTCCAGAGTATGGTATATTGGTTTATGAATATATGGCGAATGGAAGCTTAGAAGATTGTCTGAATCGAAAAAAGAAGGGTGGTAGGGTTCTGTGTTGGCAGCTGAGGTTCCGGATTGCTGCAGAGATAGCCACGGGCTTGCTATTCCTACATCAGACGAAGCCTGAACCTTTGGTGCACCGTGATTTGAAACCCGGCAACATTTTGCTGGACCAGAATTATGTATGTAAGATTAGTGATGTTGGATTGGCAAGGCTGGTCCCTGTGATGGCTGAAAATGTAACACAGTGTTGCATGACATCAGCAGCGGGAACATTCTGTTATATTGATCCCGAGTATCAGCAAACAGGAATGCTTGGTGTGAAGTCGGACATATATTCTCTGGGGATCATATTTCTACAGTTATTGACTGGAAGACATCCAATGGGATTGGCTCACCATGCTGAGCAGTCTATTGAGAATGGCACATTTGAGGAAATGCTTGACCAATCTCTATCTCACTGGCCCATTCAAGAAGCCCTCACCCTTGCAAATATAGCTGTAAATTGTGCACAACTCAGACGAAAAGATCGCCCAGACCTTGCCAAAGTAGTGTTGCCTGAGCTTGTTAAACTCAGAGAGTTTGCTGAAGAAAATATGGGTCCCATCTTTTTAGGAGGAGGCATTACTTTTAGTAGTAGTGGTAGTGCTGAACCTTCCCCCAACCACAGTGAAGTTTCTGTGCAGCAGGATGTGATGAGCGACCCACAGCTTGTAAATTCAGGAAGCTCAATAAGTCCACCAACTTCATCAACTCCAACAGAAGAAAATCCTTAA 1419 0.4327 DETEADMRRLKLELKQTMEMYNTACREALTAQHKLMEMSHWKIEEEKKLEEARLSQEAAMAIAEKEKARSKAAMETAEAARKIANVELHRKSRVPVKSLKEAEDMRKLLDNLAQTDVRYRRYSIEEIEAATNMFSEKLKIGEGGYGPVYKCYLDHTPVAVKVLSPDAAQGKSQFQQEIVIPPQVDILSCMRHPNLVLLLGACPEYGILVYEYMANGSLEDCLNRKKKGGRVLCWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVCKISDVGLARLVPVMAENVTQCCMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQLLTGRHPMGLAHHAEQSIENGTFEEMLDQSLSHWPIQEALTLANIAVNCAQLRRKDRPDLAKVVLPELVKLREFAEENMGPIFLGGGITFSSSGSAEPSPNHSEVSVQQDVMSDPQLVNSGSSISPPTSSTPTEENP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4846g00001 472 ProSiteProfiles Protein kinase domain profile. 134 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4846g00001 472 Gene3D Transferase(Phosphotransferase) domain 1 213 414 - -
Trme4846g00001 472 Coils Coil 7 27 - -
Trme4846g00001 472 Pfam Protein kinase domain 135 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4846g00001 472 PANTHER OS02G0152300 PROTEIN 3 456 - -
Trme4846g00001 472 SMART serkin_6 134 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme4846g00001 472 MobiDBLite consensus disorder prediction 428 472 - -
Trme4846g00001 472 Gene3D Phosphorylase Kinase; domain 1 112 212 - -
Trme4846g00001 472 SUPERFAMILY Protein kinase-like (PK-like) 117 399 IPR011009 -
Trme4846g00001 472 Coils Coil 46 80 - -
Trme4846g00001 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Trme4846g00001 472 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 106 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4846g00001 Trme-Chr4846 106 1849 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4846g00001 1 451 Receptor kinase-like Gene Family AT1G78940 60.754 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trme4846g00001 Pkinase 9.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4846g00001 - - gsj:114376387 687.182