Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48463g00001 ATGAGCCGCCACAAAGACGCAGCTCTCGCGCCTTGCTTCCTCCCCTTTCTAGAAGGTCTTCTTTGCTTAAGAAAGAATCCAAGGTTTGTCATGAAGTTCCTTCTCGACACTGCTCTTACGGACAGGCTGTGCTTAATGATTTTTCGTGCTTATCATTATTACTTTGGCCAGACTTTACTTACCTCGCGGCCGAACTCTGGATTACCGGGGCTCCCTTCCCTGGGAACCAGAGGGTTAATACCAAAAAAATTAAGAATAGTCTGCATAAATGTTCTTTGTGGAGTAGGAATCCTTTCAACCCCTTATGCTGCTAAAGAAGGTGGATGGGTTGGACTTTCCATTTTGTTCATTTTTGGAATCATTTCCTTTTATACCGGATTGCTCTTGCGTTCTTGCTTGGACAGTGAACCTGGCCTTGAAACATACCCTGACATTGGCCAAGCTGCTTTTGGAACTACCGGACGTATCGCAATTTCA 477 0.4507 MSRHKDAALAPCFLPFLEGLLCLRKNPRFVMKFLLDTALTDRLCLMIFRAYHYYFGQTLLTSRPNSGLPGLPSLGTRGLIPKKLRIVCINVLCGVGILSTPYAAKEGGWVGLSILFIFGIISFYTGLLLRSCLDSEPGLETYPDIGQAAFGTTGRIAIS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48463g00001 159 PANTHER OS05G0424000 PROTEIN-RELATED 89 155 - -
Trme48463g00001 159 Pfam Transmembrane amino acid transporter protein 86 158 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48463g00001 Trme-Chr48463 106 789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48463g00001 89 159 Amino Acid or Auxin Permease AAAP Family AT2G39130 81.690 5.17e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48463g00001 K15015 - lja:Lj5g3v1806960.3 132.88