Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48458g00001 ATGTCTGAGTTGGTTAATGATTTTTACAACAATGGTTTGCCTTCAAATCTTTCTGGTGGTAAATGTTTAAGCTTGGATTATGGACTTAAAGGCGGCGAGATAGCAATGGCTGCATATTGTTCTGAGCTTCAGTTTTTAGCTAATCCTGTTACTAATCATGTTCAAAGTGCAGAACAGCATAATCAAGATATTAATTCACTTGGATTAATCTCAGCTAGGAAAACAGCAGAAGCTGTTGAGATATTAAAGCTTATGTCTTCAACTTATTTGATTGCTTTATGTCAAGCAATAGATTTGAGGTATTTGGAAGAAAATTTAAAGAGTACAGTTAAGAATATAGTGAGTCAAGTGGCTAGAAAAATCTTAAATATTGGAGTTAATGGTGAGATTCATCATTGCATGTCTTGTGAGAAAGATTTGATTAAAGTGGTTGATTGTGAGTATGTTTTTGCATATATTGATGACCCTTGTAATGACACATATCCACTTATGCAAAAATTGAGGCAAGTGCTTATGGAACATGCATTGAAAAGTGGTAAAAATAATGATTTGAAAAGTTTAAATGCTTCTATTTTCCTTAAGATAGGTGCATTTGAGGAGGAACTAAAAAGGGTGTTGCCAAAAGAGGTTGAATCTACAAGAAGTGCTTTTGAAAAAGGGATTTTGGCAAGTCCTAACAAAATCAAGAAATGCAGGTCTTATCCATTGTATAAGTTTATTAGAGAGGAATTGGAGACTGAGTTTTTAACTGGTGAGAAAGTTAAATCACCAGGAGAAGATTTTGATAAAGTTTTTAATGCAATTAATCTTGGAAAGATAATAGATCCAATGTTTGAATGCCTCAAGGATTGGGATGGTACTCCCCTTCCTATATAA 876 0.3345 MSELVNDFYNNGLPSNLSGGKCLSLDYGLKGGEIAMAAYCSELQFLANPVTNHVQSAEQHNQDINSLGLISARKTAEAVEILKLMSSTYLIALCQAIDLRYLEENLKSTVKNIVSQVARKILNIGVNGEIHHCMSCEKDLIKVVDCEYVFAYIDDPCNDTYPLMQKLRQVLMEHALKSGKNNDLKSLNASIFLKIGAFEEELKRVLPKEVESTRSAFEKGILASPNKIKKCRSYPLYKFIREELETEFLTGEKVKSPGEDFDKVFNAINLGKIIDPMFECLKDWDGTPLPI 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48458g00001 291 PANTHER HISTIDINE AMMONIA-LYASE 1 291 IPR001106 -
Trme48458g00001 291 SUPERFAMILY L-aspartase-like 2 291 IPR008948 GO:0003824
Trme48458g00001 291 Pfam Aromatic amino acid lyase 2 114 IPR001106 -
Trme48458g00001 291 Gene3D Fumarase/aspartase (Central domain) 1 156 - -
Trme48458g00001 291 Gene3D Fumarase/aspartase (Central domain) 163 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48458g00001 Trme-Chr48458 12 887 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48458g00001 1 291 Monolignol Biosynthesis Gene Families AT2G37040 70.790 1.56e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48458g00001 K10775 - tpra:123898449 495.738