Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48428g00001 ATGAAGAAGAAAGTTGAGAAGGATTTGGATGGACAAATTACTGAAATTGTATATAAGGGAACTCATAATCACCCTAAGCCTCAGTCAAATAGAAGAACAAGCTCTCAACCATCTTCGTCTTGCACTAACTCCGGAATTTCTGATCAATCGGTGATGGATCATGTTTCCATACAAGAAGATTCTTCAGCTTCCGTGGGAGAGGAAGAGTTTGAGCAAACATCACAGACCAGYTATTCTGGTGGAGGAAATGATGACGCAAATGGACCGGAGGCCAAAAGATGGAAGGGTGATAATGAAAATGATGTCTATTCTGCCTCGGCTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGCGAAATCGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAG 443 0.4018 MKKKVEKDLDGQITEIVYKGTHNHPKPQSNRRTSSQPSSSCTNSGISDQSVMDHVSIQEDSSASVGEEEFEQTSQTSYSGGGNDDANGPEAKRWKGDNENDVYSASASRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48428g00001 147 ProSiteProfiles WRKY domain profile. 122 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme48428g00001 147 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 146 IPR044810 GO:0003700
Trme48428g00001 147 SUPERFAMILY WRKY DNA-binding domain 119 146 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme48428g00001 147 Gene3D WRKY domain 114 147 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme48428g00001 147 MobiDBLite consensus disorder prediction 1 113 - -
Trme48428g00001 147 Pfam WRKY DNA -binding domain 128 146 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme48428g00001 147 MobiDBLite consensus disorder prediction 23 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48428g00001 Trme-Chr48428 164 719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48428g00001 2 146 WRKY Transcription Factor Family AT2G38470 53.846 4.21e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme48428g00001 WRKY 9.6e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48428g00001 K13424 - gmx:100792833 234.572