Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48409g00001 ATGTCCTTCCGTAGTATAATGCGTGATGTGAGAGATGGATTTGGAAGTTTATCAAGGCGGAGTTTTGAGGTGAGGCTTCCTGGCCATCAAAGGGGAAAGTCACGTAGTTCGGTTCATGAATTGCATGATCAGCCTCAAGTTATACAGAACAGCCGGTGGGCTAGCCTTCCACCCGAGCTTCTACGTGATGTGATTAAGAGATTGGAAACTAATGAGAGTACTTGGCCTAATCGTAAGCATGTGGTTGCTTGTGCTGCTGTGTGCAAGTCATGGAGAGAAATGTGCAAAGAAATTGT 296 0.4561 MSFRSIMRDVRDGFGSLSRRSFEVRLPGHQRGKSRSSVHELHDQPQVIQNSRWASLPPELLRDVIKRLETNESTWPNRKHVVACAAVCKSWREMCKEIV 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48409g00001 99 CDD F-box_AtTLP-like 53 97 - -
Trme48409g00001 99 FunFam Tubby-like F-box protein 48 99 - -
Trme48409g00001 99 SUPERFAMILY F-box domain 44 96 IPR036047 GO:0005515
Trme48409g00001 99 Pfam F-box domain 53 98 IPR001810 GO:0005515
Trme48409g00001 99 Gene3D - 46 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48409g00001 Trme-Chr48409 676 971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48409g00001 1 99 TUB Transcription Factor Family AT1G76900 66.019 3.89e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48409g00001 K19600 - gmx:100817532 189.889