Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48392g00001 ATGGCTCACAAATTAACCACCAAAAAAGAAGAAACAGAATTTGAAGTACCTGAAACAACAATCACACCATGCATCAACAACAACCCTTCAACAATAACAACAGAATCTTCTAGATTTTTTGAAGACAACAACAAACCATCAGCAACAACAGCCAGATCCGCCACGTCATCACGTTCACCGAAGAGATCTCATCCTAGCAACGAAGATACAGAAATTCAACCACAAACGACGTCGTCAGAAGCTAAACGCGCTGTTAATCGTTGCTCNGGTTGTCGAAAGAGAGTCGGTCTTACAGGATTCCGTTGCCGATGCGGTGATCTGTTTTGCTCCGATCATCGTTACTCCGATCGTCATGATTGTTCTTATGATTATAAAGCTGCTGGTAGAGAAACTATTGCTAGAGAAAATCCTGTTGTTAGAGCAGCTAAGATCGTTAAGCTCTGA 444 0.4189 MAHKLTTKKEETEFEVPETTITPCINNNPSTITTESSRFFEDNNKPSATTARSATSSRSPKRSHPSNEDTEIQPQTTSSEAKRAVNRCSGCRKRVGLTGFRCRCGDLFCSDHRYSDRHDCSYDYKAAGRETIARENPVVRAAKIVKL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48392g00001 147 SMART AN1_Zf_4 88 125 IPR000058 GO:0008270
Trme48392g00001 147 MobiDBLite consensus disorder prediction 1 85 - -
Trme48392g00001 147 MobiDBLite consensus disorder prediction 69 84 - -
Trme48392g00001 147 SUPERFAMILY AN1-like Zinc finger 71 141 IPR035896 -
Trme48392g00001 147 Gene3D - 43 143 IPR035896 -
Trme48392g00001 147 ProSiteProfiles Zinc finger AN1-type profile. 82 128 IPR000058 GO:0008270
Trme48392g00001 147 MobiDBLite consensus disorder prediction 19 61 - -
Trme48392g00001 147 MobiDBLite consensus disorder prediction 1 16 - -
Trme48392g00001 147 Pfam AN1-like Zinc finger 88 125 IPR000058 GO:0008270
Trme48392g00001 147 FunFam Zinc finger AN1-type containing 6 61 143 - -
Trme48392g00001 147 PANTHER AN1-TYPE ZINC FINGER PROTEIN 44 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48392g00001 Trme-Chr48392 301 744 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48392g00001 72 147 C2H2 Transcription Factor Family AT3G52800 57.895 2.37e-28 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48392g00001 - - lja:Lj3g3v0478150.1 195.282