Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48389g00001 GAAAAAGAAGAAAAGAAGTCACATAACAAGGCTGGTAAGAAAGGAAACTGCTGCATTTGCTATAAGATGAAAGTTGATTCAGTCCTATACAGGTGCGGACACATGTGTGCATGTCTGAAATGTGCAAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCAAGCTAAAATAGACGATGTTGTTCGAGTTTACGTTGATGCTTAG 210 0.381 EKEEKKSHNKAGKKGNCCICYKMKVDSVLYRCGHMCACLKCANELQWNSGKCPICQAKIDDVVRVYVDA 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48389g00001 69 Pfam Zinc finger, C3HC4 type (RING finger) 14 62 - -
Trme48389g00001 69 SUPERFAMILY RING/U-box 14 61 - -
Trme48389g00001 69 ProSiteProfiles Zinc finger RING-type profile. 17 56 IPR001841 -
Trme48389g00001 69 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Trme48389g00001 69 PANTHER BNAC05G24000D PROTEIN 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48389g00001 Trme-Chr48389 323 628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48389g00001 9 69 C3H Transcription Factor Family AT3G06140 32.787 1.22e-10 53.1