Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48382g00001 GTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGTGATGAAAGTTTTACTCATGAAGTTCAAGTTATTGCTAGTGTTAGACATGTTAATCTTGTTGCTTTAAGAGGTTATTGTACTGCTACTACTAATTTAGAAGGTCATCAGAGGATTATTGTTACTGATTTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAAGAAGAAATTGAGTTGGCCGATGCGTCAGAAGATTGCTCTTGGTACGGCTAGGGGTTTAGCTTATTTGCATTATGGTGCTCAACCGTCGATCATTCATAGGGATATTAAAGCGAGTAATATACTTTTGGATGAGAAGTTTGAAGCTAAGGTAGCGGATTTTGGATTGGCGAAGTTTAATCCTGAGGGTATGACTCATATGAGTACTAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGAGAGGAGTGATGTGTTTAGTTTCGGTGTTTTGCTTCTCGAGCTTTTGAGCGGAAGAAAGGCGCTTGAAACGAATGAGGATGGTCAACCCACTGCTTTTAGTGACTTGGCTTGGTCATTGGTTAGAAATAATAGGGCTTTGGATGTTGTTGAAGATGGTATGCCAGAACCTGGTACACCAGAAATTCTCGAGAAATATGTGTTGGTTGCTGTTTTATGTTCTCATCCACAGCTATATGCGAGGCCAACAATGGATCAGGTTGTTAAAATGCTGGAAACAGATGATGAAGCATTGCCCTCGGTAGTCGAAAGGCCAATCCCTTTTATTTCTGGGAGACTTGATATTGAGAAATCTGCGAGCAATAACTCGGGTCAGCTCTGCAGTCCAACTGGTTATCAAGCATATACATTGCAATTACAAAGTCGTCG 905 0.3901 VALKRFKNCSVAGDESFTHEVQVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDXXXXXXXXXXXXXXXKKKLSWPMRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGRKALETNEDGQPTAFSDLAWSLVRNNRALDVVEDGMPEPGTPEILEKYVLVAVLCSHPQLYARPTMDQVVKMLETDDEALPSVVERPIPFISGRLDIEKSASNNSGQLCSPTGYQAYTLQLQSRR 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48382g00001 302 Coils Coil 71 73 - -
Trme48382g00001 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Trme48382g00001 302 ProSiteProfiles Protein kinase domain profile. 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48382g00001 302 SMART serkin_6 1 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme48382g00001 302 PIRSF ILK 1 259 - -
Trme48382g00001 302 SUPERFAMILY Protein kinase-like (PK-like) 1 267 IPR011009 -
Trme48382g00001 302 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 61 258 - -
Trme48382g00001 302 Pfam Protein tyrosine and serine/threonine kinase 1 250 IPR001245 GO:0004672|GO:0006468
Trme48382g00001 302 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 280 - -
Trme48382g00001 302 Gene3D Phosphorylase Kinase; domain 1 1 55 - -
Trme48382g00001 302 Gene3D Transferase(Phosphotransferase) domain 1 66 261 - -
Trme48382g00001 302 Coils Coil 53 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48382g00001 Trme-Chr48382 67 971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48382g00001 1 296 Receptor kinase-like Gene Family AT2G48010 71.141 6.24e-153 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trme48382g00001 PK_Tyr_Ser-Thr 1.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48382g00001 - - gmx:100786298 502.671