Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme483694g00001 CGTGGCCTTGCATATCTCCACCATGCGAGTTCAAAACCTATTGTGCACGGACACCTTGTCACCTCCAACATTTTGCTTACTGATGATTTGGAGCCTCGAATCTCCGATTTTGGACTGCAAATCAACTCGAGTTCCAATGGTGGCATTGAAGATGATGTGTACTGCTTTGGAGTGGTGTTGATGGAGCTGCTTACCGGGAGGGTCGGCACAACAGAGACACTTGTTGCAGTTAGAAAGGCAGTGAGGGAGGAGCAACATGTTCGAGTGCTTGATGAGAGGTTGC 283 0.4912 RGLAYLHHASSKPIVHGHLVTSNILLTDDLEPRISDFGLQINSSSNGGIEDDVYCFGVVLMELLTGRVGTTETLVAVRKAVREEQHVRVLDERL 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme483694g00001 94 Gene3D Transferase(Phosphotransferase) domain 1 1 92 - -
Trme483694g00001 94 Pfam Protein tyrosine and serine/threonine kinase 2 43 IPR001245 GO:0004672|GO:0006468
Trme483694g00001 94 ProSiteProfiles Protein kinase domain profile. 1 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme483694g00001 94 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 94 - -
Trme483694g00001 94 SUPERFAMILY Protein kinase-like (PK-like) 1 69 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme483694g00001 Trme-Chr483694 1 283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme483694g00001 1 67 Receptor kinase-like Gene Family AT1G09970 42.553 1.02e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trme483694g00001 PK_Tyr_Ser-Thr 6.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme483694g00001 - - gmx:100809704 139.813