Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme48368g00001 | ATGGAAGCTCTGGATGTTGTCCACATCAGTAAAGNAGACCAAGAGACTGTATTTGCTATGCTTGCTGCAGTATTATGGTTAGGGAACATATCATTTACTGTCATTGATAATGAAAACCATGTTCAAGCTGTTGAAAATGAGG | 142 | 0.3803 | MEALDVVHISKXDQETVFAMLAAVLWLGNISFTVIDNENHVQAVENE | 47 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme48368g00001 | 47 | PANTHER | MYOSIN | 1 | 46 | - | - | |
| Trme48368g00001 | 47 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 44 | IPR027417 | - | |
| Trme48368g00001 | 47 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 6 | 47 | - | - | |
| Trme48368g00001 | 47 | ProSiteProfiles | Myosin motor domain profile. | 1 | 47 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme48368g00001 | 2 | 47 | Myosins gene family | AT1G50360 | 76.087 | 1.54e-20 | 80.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme48368g00001 | - | - | gmx:100781736 | 89.3521 |