Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme482834g00001 ATGGAGACACGAATCGTGACACAGTTATTAACTTGCATGGAAGGAGCTGCTTATTCAGGGAGTTCTAATAAACCTACTGGCCATGTTCTTGTAATTGGAGCCACAAATAGGATAGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGTTTTGACCGTGAAATTCTTGTTGGCATTCCTGATGAATCTGCCAGGGAGGAGATCCTTTTCAT 212 0.434 METRIVTQLLTCMEGAAYSGSSNKPTGHVLVIGATNRIDAIDSALRRPGRFDREILVGIPDESAREEILF 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme482834g00001 70 ProSitePatterns AAA-protein family signature. 29 47 IPR003960 GO:0005524|GO:0016887
Trme482834g00001 70 PANTHER AAA DOMAIN-CONTAINING 27 69 IPR045199 -
Trme482834g00001 70 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 69 IPR027417 -
Trme482834g00001 70 Gene3D - 60 69 - -
Trme482834g00001 70 Pfam ATPase family associated with various cellular activities (AAA) 2 58 IPR003959 GO:0005524|GO:0016887
Trme482834g00001 70 Gene3D - 2 59 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme482834g00001 Trme-Chr482834 1 212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme482834g00001 1 69 Calmodulin-binding Proteins AT3G56690 46.377 2.21e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme482834g00001 K14571 - psom:113308148 94.3597