Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme482748g00001 ATGAGTAATACAGAATTCAAGAGAGTGGAGATTAGTGAGGAGACAAAAACTGAATGGACTGAGAAGGAAACATTGAATCTTCTTGAAGCTATTACGTATTTCGGTGATGATTGGAAGAGGGTTTCTCATCATGTTGTTGGTAGGACTGAGAAGGAATGTGTTGCTCGTTTTCTTAAGCTTCCTTTTGGTGATCAATTCCTGC 202 0.3911 MSNTEFKRVEISEETKTEWTEKETLNLLEAITYFGDDWKRVSHHVVGRTEKECVARFLKLPFGDQFL 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme482748g00001 67 SMART sant 15 63 IPR001005 -
Trme482748g00001 67 ProSiteProfiles SANT domain profile. 14 65 IPR017884 -
Trme482748g00001 67 FunFam SWI/SNF complex subunit SMARCC2 isoform C 14 65 - -
Trme482748g00001 67 Pfam Myb-like DNA-binding domain 17 60 IPR001005 -
Trme482748g00001 67 ProSiteProfiles Myb-like domain profile. 11 61 IPR001005 -
Trme482748g00001 67 SUPERFAMILY Homeodomain-like 15 64 IPR009057 -
Trme482748g00001 67 Gene3D - 13 65 - -
Trme482748g00001 67 PANTHER SWI/SNF COMPLEX-RELATED 16 67 - -
Trme482748g00001 67 CDD SANT 18 60 IPR001005 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme482748g00001 Myb_DNA-binding 5.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme482748g00001 K11649 - han:110877308 95.1301