Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48273g00001 TGGCAAAAACTGAAACGAGTTCACCGTCGAGCACAGCCAAATGACGGTTTCGCAAAGATCTTACAAGAACTGGATCAGAAACTGCATGGGAAAGTTTCAATGGAGTGGCAGCATCGGAAACCAACCATGAAAGTTTGTCCCATCTGTGGAAAAAATGCCGGGTTAAGCAGTAGTTCACTTAAGTTACATCTGCAGAAATCACATAGAAAACTATCATCAGGTAGTGTAGATAGTGCCATGACAATGGAGATCCAAAAGGCATTAACAGCTTTGAAGATTAGCCACAGTGGGAGTATCAGCCCCACACAGAAGACTTCTCCAAACAGTGGCAGTTTATAA 339 0.4307 WQKLKRVHRRAQPNDGFAKILQELDQKLHGKVSMEWQHRKPTMKVCPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISHSGSISPTQKTSPNSGSL 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48273g00001 112 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 107 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trme48273g00001 112 MobiDBLite consensus disorder prediction 93 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48273g00001 Trme-Chr48273 60 398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48273g00001 1 94 Protein tyrosine phosphatase (PTP) family AT5G23720 85.106 2.75e-44 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48273g00001 K14165 K17614 gmx:100799468 179.874