Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme482636g00001 GGAATGCAACGGGAGGCTTCTAGTCTTCTTATTCAAAGGTATTTCCGCATGCATATTGCTAGAAAGGCGTATAAAGACTTGTATGCCTCTGCTGTCTCTATCCAGACTGGTATGCGGGTGATGGCTGCTAGTCGTGAGCTACACTTTAGAAGGAGGACTAGTGCAGCAATTGTCATTCAGGTGGGGGATACTTTGAAGAGCGTCTATATAAGATAG 216 0.4537 GMQREASSLLIQRYFRMHIARKAYKDLYASAVSIQTGMRVMAASRELHFRRRTSAAIVIQVGDTLKSVYIR 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme482636g00001 71 SMART iq_5 3 25 IPR000048 GO:0005515
Trme482636g00001 71 FunFam unconventional myosin-Va 6 54 - -
Trme482636g00001 71 Gene3D - 3 58 - -
Trme482636g00001 71 Pfam IQ calmodulin-binding motif 7 25 IPR000048 GO:0005515
Trme482636g00001 71 ProSiteProfiles IQ motif profile. 4 33 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme482636g00001 Trme-Chr482636 2 217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme482636g00001 1 60 Myosins gene family AT5G43900 61.667 1.28e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme482636g00001 K10357 - gmx:100791070 95.1301