Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48256g00001 ATGCAGAGTCAAATTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTATCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCCCTGTTCCTCCACCTGGGATGGATATGGCTCAACTATATTGTGGAGGTTGTAGGACATTGCTAATGTACACACGCGGGGCTACAAGTGTCAGGTGTTCTTGCTGTCACACTGTAAACCTTGCTCCAG 223 0.4664 MQSQIVCNGCRSMLLYPRGATNVCCALCNTITPVPPPGMDMAQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAP 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48256g00001 74 NCBIfam zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Trme48256g00001 74 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Trme48256g00001 74 Pfam LSD1 zinc finger 46 70 IPR005735 -
Trme48256g00001 74 Pfam LSD1 zinc finger 7 31 IPR005735 -
Trme48256g00001 74 PANTHER PROTEIN LSD1 2 73 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trme48256g00001 zf-LSD1 3.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48256g00001 - - gmx:100776394 157.147