Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4824g00001 GAATGCATAACATCTAAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCCTGCGACAGAATAAAAGTTGTTGATGATTTCCAAGATGGTGTTGGAGCTCCAATATTTCTGTTGACATCTCAGGTTGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAAAAGAAAGAACAAACTCGATACTTTTGCCAGCAGGATCTTAAGGAGCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTGTCTGTTACCCAACGGCAATTGGCTGAGAAACATGATTCTCAACATATAGTGTAA 480 0.3833 ECITSKGYDFLRIDGTTKSCDRIKVVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTVSEKKEQTRYFCQQDLKELFSLPKEGFDVSVTQRQLAEKHDSQHIV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4824g00001 159 SMART helicmild6 1 80 IPR001650 -
Trme4824g00001 159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 139 IPR027417 -
Trme4824g00001 159 Pfam Helicase conserved C-terminal domain 5 80 IPR001650 -
Trme4824g00001 159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 130 IPR001650 -
Trme4824g00001 159 PANTHER SNF2/RAD54 FAMILY MEMBER 2 151 - -
Trme4824g00001 159 Gene3D - 1 159 IPR027417 -
Trme4824g00001 159 CDD SF2_C_SNF 3 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4824g00001 Trme-Chr4824 148 1852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4824g00001 6 133 RAD5 or RAD16-like Gene Family AT5G43530 36.719 4.61e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4824g00001 K20093 - gmx:100779283 286.574