Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48232g00001 ATGGGAAAAACCAAAAGTTCAAATTCCTCTTCATCTATTAGCAGCAACACCAACCACAATCTTTTTATTTCAACTGCATCCTCTCTCAACTCACAACAACTTCCCACAGATCTTAGTCTTGGACTCACCATTTCCTCCACTCAACATTTTCGTGTTGGCTCCTCTGTTTCAAGGGGGCAATGGCAACTAAACTTTGATTATAGTGATCATAGTAGCTTCTTTGTGAAAGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTNAATATACTTGCTCATCAAAGTTACCATGAGTTAGTAAAAACTCTTGAACACATGTTTGACACTACCATTCTATGGGGAAATGAAATGGATGAAGTGCAACCAGAGAGATGCCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTG 411 0.382 MGKTKSSNSSSSISSNTNHNLFISTASSLNSQQLPTDLSLGLTISSTQHFRVGSSVSRGQWQLNFDYSDHSSFFVKVYMEGIPIGRKLNILAHQSYHELVKTLEHMFDTTILWGNEMDEVQPERCHVLTYEDEEGDL 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48232g00001 137 Coils Coil 130 137 - -
Trme48232g00001 137 SUPERFAMILY CAD & PB1 domains 67 137 - -
Trme48232g00001 137 Pfam AUX/IAA family 69 136 IPR033389 -
Trme48232g00001 137 Gene3D - 66 137 - -
Trme48232g00001 137 ProSiteProfiles PB1 domain profile. 72 137 IPR000270 GO:0005515
Trme48232g00001 137 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 136 IPR003311 GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48232g00001 75 136 B3 DNA Binding Superfamily AT2G46530 33.871 1.97e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trme48232g00001 AUX_IAA 7.9e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48232g00001 K14484 - gmx:100818376 189.119