Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4819g00001 ATGGTGCATACAGGCGCATGTGTAGCAGCATTGTTGGGTCAAGGAGGTTCCAAAAGATTTGGAATAACATGGAGATGGTTACGATTTTTTAAGAATGACCGTGATCGACGAGATCTAATAATATGTGGATCAGCAGCTGGAATTGCTGCCGCTTTTCGTGCCCCTGTTGGCGGTGTCTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGAACTGCTCTTCTATGGAGAGCTTTCTTTACCACAGCAACAGTAGCAATTTTCCTTCGAGCCATGATTGATGTATGTCTAAGTGGCAAATGTGGGCTATTCGGTAAAGGGGGACTGATAATGTTTAATGCTTATTCAGCAAGTATTTCGTACCATTTGGGAGATGTTCCTCCTGTGTTTATTCTTGCTGTTGTAGGAGGGTTACTCGGAAGCTTATTTAATTTTATGACAAATAAAGCTCTTCGCATGTACAACGTTATCAACGAGAAAGGCACCATTTACAAACTTTTGCTTGCTTGTTTAATCTCCATTTTTACATCATGTCTTCTTTTCGGATTGCCATTCTTTGCATCTTGCCGACTTTGTCCTCCTGATGCAGTTGAGCCTTGTCCAACAATAGGTCGATCCGGTATCTACAAGAAATTCCAATGCCCTCCTAATCACTATAACGGCCTTGCCAGCCTCATTTTTAACACAAACGACGATGCTATCAAAAACCTATTTAGCATGAACACCGACAATGAGTTCGAGTTTTCATCGATGTTGATTTTTTTCTGCATATGTCTCTTTTTAACTATCTTTAGCTGTGGAATTGTTGCCCCTGCCGGTCTTTTTGTGCCAATTATCGTGACTGGTGCATCGTACGGACGCATGGTTGGAATATTGGTTGGAAAACGGTCCAATCTTAGCCATGGCCTTTATGCTGTACTCGGTGCTGCTTCTCTTCTTGGTGGATCTATGAGGACAACGGTTTCTCTTGTAGCAAATGTTTTCAATGCTAATGTATATGACCTTATAATGAAAGCCAAAG 1021 0.4182 MVHTGACVAALLGQGGSKRFGITWRWLRFFKNDRDRRDLIICGSAAGIAAAFRAPVGGVLFALEEMASWWRTALLWRAFFTTATVAIFLRAMIDVCLSGKCGLFGKGGLIMFNAYSASISYHLGDVPPVFILAVVGGLLGSLFNFMTNKALRMYNVINEKGTIYKLLLACLISIFTSCLLFGLPFFASCRLCPPDAVEPCPTIGRSGIYKKFQCPPNHYNGLASLIFNTNDDAIKNLFSMNTDNEFEFSSMLIFFCICLFLTIFSCGIVAPAGLFVPIIVTGASYGRMVGILVGKRSNLSHGLYAVLGAASLLGGSMRTTVSLVANVFNANVYDLIMKAK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4819g00001 340 Gene3D Clc chloride channel 1 335 - -
Trme4819g00001 340 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme4819g00001 340 PRINTS Plant CLC chloride channel signature 80 90 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme4819g00001 340 PRINTS Plant CLC chloride channel signature 222 238 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme4819g00001 340 PRINTS Plant CLC chloride channel signature 98 105 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme4819g00001 340 PRINTS Chloride channel signature 45 64 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme4819g00001 340 PRINTS Chloride channel signature 302 318 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme4819g00001 340 PRINTS Chloride channel signature 270 290 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme4819g00001 340 SUPERFAMILY Clc chloride channel 1 325 IPR014743 -
Trme4819g00001 340 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 324 - -
Trme4819g00001 340 Pfam Voltage gated chloride channel 1 328 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4819g00001 Trme-Chr4819 56 1817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4819g00001 1 340 Ion Channels AT5G33280 71.311 4.83e-178 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4819g00001 K05016 - gmx:100817901 563.918