Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48176g00001 CATTTCTTGCCCTTTAATCCTGTGGACAAACGCACAGCTATTACCTATATTGACAAAAATGGTGACTGGCATAGAAGCAGCAAAGGTGCTCCTGAGCAAATTATTGAGCTCTGTGAACTTAAGGGAGAGACTTTGAAAAGGGCACACAAAACCATCGATGAGTATGCGGAGCGCGGTCTACGTTCCTTGGCCGTTGGTTTCCAAACTGTTTCAGAAAAGACCAAGGAGAGTGCAGGAGAACCATGGGTGTTCTTGGGTCTCTTACCCCTCTTTGACCCTCCTAGACATGACAGTGCTGAGACTATTCGTCGTGCTCTTGACCTCGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGAAAAGAAACCGGTCGCAGACTTGGAATGGGAACCAACATGTACCCTTCATCCTCCCTTCTTGGCCAATGCAAGGATGTAGCCATTGCATCAATGTCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCTGGGGTCTTCCCTG 514 0.4708 HFLPFNPVDKRTAITYIDKNGDWHRSSKGAPEQIIELCELKGETLKRAHKTIDEYAERGLRSLAVGFQTVSEKTKESAGEPWVFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQCKDVAIASMSIDELIEKADGFAGVFP 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48176g00001 171 FunFam Plasma membrane ATPase 85 171 - -
Trme48176g00001 171 PANTHER CALCIUM-TRANSPORTING ATPASE 1 171 - -
Trme48176g00001 171 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 2 97 IPR023299 GO:0000166
Trme48176g00001 171 Gene3D - 88 171 IPR023214 -
Trme48176g00001 171 PRINTS H+-transporting ATPase (proton pump) signature 48 66 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme48176g00001 171 PRINTS H+-transporting ATPase (proton pump) signature 163 171 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme48176g00001 171 SUPERFAMILY HAD-like 82 135 IPR036412 -
Trme48176g00001 171 Gene3D - 1 87 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48176g00001 Trme-Chr48176 219 973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48176g00001 1 171 Primary Pumps ATPases AT1G80660 84.211 7.93e-99 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48176g00001 K01535 - gmx:100798717 306.605