Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48152g00001 ATGAATTTGGATAAGACAATTGACCACAAAGCTTTGCATGATACCTTTTCTACTTTCGGACATATTCTGTCTTGCAAGATAGCGACTGATGGTTCTGGTCAGTCTAAAGGCTATGGTTTTGTCCAATTTGAGAATGCGGAATCTGCTCAGAGTGCAATTGATAAGTTAAATGGCATGCTGATCAATGACAAGCAGGTGTATGTGGGTCATTTCCTACAGTCATTTTCGGAAGATGACTTGAAAAATACTTTTGGAGAGTACGGCACTATTACTAGTGCTGTTTTGATGAGGGATGCAGATGGTAGGTCGAAGTGTTTTGGTTTTGTCAATTTTGAAAGTCCTGAGGATGCTGCTAAAGCTGTTGAGGCATTGAATGGAAAGAAAGTTGATGACAAGGAGTGGTATGTGGGAAAAGCCCAGAAAAAATCTGAAAGGGAGCAAGAGCTGAAAGGTCGGTTTGAGCAGACTGTAAAGGAAACTGTAGACAAATATCAAGGGGTGAACCTTTATCTCAAGAACTTGGATGATTCCATTAGTGATGAAAAACTCAAAGAGATCTTCTCCGAGTTTGGCACAATTACCTCGTACAAG 591 0.4044 MNLDKTIDHKALHDTFSTFGHILSCKIATDGSGQSKGYGFVQFENAESAQSAIDKLNGMLINDKQVYVGHFLQSFSEDDLKNTFGEYGTITSAVLMRDADGRSKCFGFVNFESPEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKETVDKYQGVNLYLKNLDDSISDEKLKEIFSEFGTITSYK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48152g00001 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 197 IPR000504 GO:0003723
Trme48152g00001 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 73 IPR000504 GO:0003723
Trme48152g00001 197 SMART rrm1_1 2 69 IPR000504 GO:0003723
Trme48152g00001 197 SMART rrm1_1 70 137 IPR000504 GO:0003723
Trme48152g00001 197 PANTHER RNA BINDING PROTEIN 2 197 - -
Trme48152g00001 197 FunFam Polyadenylate-binding protein 66 149 - -
Trme48152g00001 197 Gene3D - 164 197 IPR012677 -
Trme48152g00001 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Trme48152g00001 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 196 IPR000504 GO:0003723
Trme48152g00001 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 134 IPR000504 GO:0003723
Trme48152g00001 197 CDD RRM2_I_PABPs 2 70 IPR045305 -
Trme48152g00001 197 SUPERFAMILY RNA-binding domain, RBD 2 70 IPR035979 GO:0003676
Trme48152g00001 197 Gene3D - 67 163 IPR012677 -
Trme48152g00001 197 SUPERFAMILY RNA-binding domain, RBD 65 196 IPR035979 GO:0003676
Trme48152g00001 197 Gene3D - 1 66 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48152g00001 Trme-Chr48152 28 787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48152g00001 2 197 Eukaryotic Initiation Factors Gene Family AT4G34110 66.210 3.65e-97 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48152g00001 K13126 - csin:114281995 329.331