Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme48149g00001 ATGTTGTGCGCAATTGGGATAGGATGCTTAACGCACTTCAAGCACAGAAGAAGGACAATATCAGATGAACCTGCCATTGACATTACCATTACAAGGATGAGGATGGGTCTAGATGAGTCAACAATTGAGTCTTTTGAGAAGATTGTATTAGGGGAGAGCCGAAGACTTCCGGGAGTAGGACACGCTGATGGAACTGGATGTTGTTCAATATGCCTATCAGAGTACAACGGCAAGGACATAATCAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTCACTGCATCGATGAATGGCTTCGCATGAATGCTACATGCCCAATTTGCCGCAACTCTCCCTCCCCTAGTCATTCTCATCTTCACATATCATCATCATGA 378 0.4418 MLCAIGIGCLTHFKHRRRTISDEPAIDITITRMRMGLDESTIESFEKIVLGESRRLPGVGHADGTGCCSICLSEYNGKDIIRCIPECKHCFHAHCIDEWLRMNATCPICRNSPSPSHSHLHISSS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme48149g00001 125 Pfam Ring finger domain 68 110 IPR001841 -
Trme48149g00001 125 ProSiteProfiles Zinc finger RING-type profile. 68 110 IPR001841 -
Trme48149g00001 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 115 IPR013083 -
Trme48149g00001 125 SUPERFAMILY RING/U-box 67 115 - -
Trme48149g00001 125 SMART ring_2 68 109 IPR001841 -
Trme48149g00001 125 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 114 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme48149g00001 Trme-Chr48149 287 664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme48149g00001 17 123 C3H Transcription Factor Family AT5G07040 47.788 1.81e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme48149g00001 - - tpra:123889576 234.572